Variant report

Variant	rs11543656
Chromosome Location	chr7:19548656-19548657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10214954	0.89[EUR][1000 genomes]
rs10486352	0.86[AMR][1000 genomes]
rs10486353	0.86[AMR][1000 genomes]
rs11535167	0.96[ASN][1000 genomes]
rs11560223	0.96[ASN][1000 genomes]
rs12056113	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16872319	0.89[EUR][1000 genomes]
rs17141529	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17141544	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17141563	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141592	0.89[EUR][1000 genomes]
rs17141600	0.89[EUR][1000 genomes]
rs17141603	0.89[EUR][1000 genomes]
rs17141605	0.89[EUR][1000 genomes]
rs17141607	0.89[EUR][1000 genomes]
rs17141614	0.89[EUR][1000 genomes]
rs17141650	0.89[EUR][1000 genomes]
rs17141652	0.89[EUR][1000 genomes]
rs17141656	0.89[EUR][1000 genomes]
rs17150289	0.86[AMR][1000 genomes]
rs2052208	0.89[EUR][1000 genomes]
rs2192478	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56129840	0.81[EUR][1000 genomes]
rs60452179	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67204384	0.89[EUR][1000 genomes]
rs9655166	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757219	chr7:19396146-19574066	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv34500	chr7:19415543-19573763	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2758107	chr7:19436043-19620962	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2755504	chr7:19462953-19555118	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv887822	chr7:19482261-19558261	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv887823	chr7:19482261-19566286	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2752153	chr7:19509002-19620651	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv887824	chr7:19524863-19687779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv887825	chr7:19536977-19615992	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv8067	chr7:19548204-19550157	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19547600-19549000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:19547800-19548800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:19547800-19548800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:19547800-19549000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:19548000-19548800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:19548000-19548800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr7:19548000-19548800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:19548000-19549600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:19548400-19548800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:19548400-19549000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:19548600-19548800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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