Variant report

Variant	rs17141544
Chromosome Location	chr7:19567171-19567172
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10214954	0.95[EUR][1000 genomes]
rs11535167	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11543656	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11560223	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12056113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872319	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141529	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17141563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17141592	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141600	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141603	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141605	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141607	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141614	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141650	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141652	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141656	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17354985	1.00[CEU][hapmap]
rs17452153	1.00[CEU][hapmap]
rs2052208	0.95[EUR][1000 genomes]
rs2192478	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60452179	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67204384	0.95[EUR][1000 genomes]
rs9655166	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757219	chr7:19396146-19574066	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv34500	chr7:19415543-19573763	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2758107	chr7:19436043-19620962	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2752153	chr7:19509002-19620651	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv887824	chr7:19524863-19687779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv887825	chr7:19536977-19615992	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1026185	chr7:19564488-19612246	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19563400-19577400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:19565200-19567400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:19565800-19567200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:19567000-19569400	Weak transcription	Muscle Satellite Cultured Cells	--

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