Variant report

Variant	rs1155268
Chromosome Location	chr5:118689221-118689222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:118688526-118696061	GM12878	blood:	n/a	n/a
2	CHD1	chr5:118688941-118694425	GM12878	blood:	n/a	n/a
3	MYC	chr5:118689056-118689246	NB4	blood:	n/a	n/a
4	TEAD4	chr5:118689002-118689365	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr5:118689028-118697007	GM18505	blood:	n/a	n/a
6	POLR2A	chr5:118688841-118700411	GM12891	blood:	n/a	n/a
7	BRCA1	chr5:118689087-118689254	GM12878	blood:	n/a	n/a
8	CEBPB	chr5:118689024-118689255	H1-hESC	embryonic stem cell:	n/a	chr5:118689095-118689106
9	MTA3	chr5:118688980-118694183	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TNFAIP8	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1509141	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1509142	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs192225	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs250302	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs250303	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs32652	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs32654	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3813309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4895369	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6595186	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6874848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869828	chr5:118610548-118691190	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv599565	chr5:118661882-118691888	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv882775	chr5:118669094-118691888	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118670800-118691000	Weak transcription	Aorta	Aorta
2	chr5:118671200-118695400	Weak transcription	A549	lung
3	chr5:118676800-118691400	Weak transcription	Lung	lung
4	chr5:118678000-118690600	Weak transcription	NHEK	skin
5	chr5:118679000-118690600	Weak transcription	Fetal Intestine Small	intestine
6	chr5:118679000-118690800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:118679800-118689400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr5:118680200-118690400	Weak transcription	Stomach Mucosa	stomach
9	chr5:118680200-118690600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:118680200-118690600	Weak transcription	Colonic Mucosa	Colon
11	chr5:118680400-118690600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr5:118680800-118691000	Weak transcription	HSMMtube	muscle
13	chr5:118682000-118689600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:118682200-118689600	Weak transcription	Pancreas	Pancrea
15	chr5:118682600-118689400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:118682600-118689600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:118682600-118690600	Weak transcription	Thymus	Thymus
18	chr5:118682600-118693600	Weak transcription	Dnd41	blood
19	chr5:118683800-118689800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr5:118683800-118689800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:118684000-118690600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:118684000-118690800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:118684000-118691000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:118684000-118691000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:118684000-118692800	Weak transcription	K562	blood
26	chr5:118684200-118689400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:118684200-118690400	Weak transcription	Hela-S3	cervix
28	chr5:118684200-118691000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:118684800-118689400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:118685000-118691000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:118685400-118690800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr5:118687000-118689600	Genic enhancers	Primary T cells fromperipheralblood	blood
33	chr5:118687200-118689600	Enhancers	Primary B cells from cord blood	blood
34	chr5:118687200-118690800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr5:118687800-118689600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr5:118687800-118690200	Flanking Active TSS	GM12878-XiMat	blood
37	chr5:118687800-118690400	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr5:118687800-118691000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr5:118687800-118691000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr5:118688000-118689400	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr5:118688000-118689800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr5:118688000-118690400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr5:118688000-118691000	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr5:118688200-118689400	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:118688200-118689600	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr5:118688200-118690400	Enhancers	Primary T cells from cord blood	blood
47	chr5:118688200-118690800	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr5:118688600-118690000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr5:118688600-118691200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr5:118688800-118690600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links