Variant report

Variant	rs4895369
Chromosome Location	chr5:118699951-118699952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118696081..118700363-chr5:118700434..118704100,5	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10077888	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs1155268	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1509141	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1509142	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1509144	0.81[CEU][hapmap]
rs1848554	0.85[JPT][hapmap]
rs192225	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs250298	0.82[CHB][hapmap]
rs250299	0.84[CHB][hapmap]
rs250302	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs250303	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs250304	1.00[CHB][hapmap]
rs32652	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs32654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3813309	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6595186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6874848	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs924623	0.84[CEU][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16366	chr5:118692052-118702846	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv599566	chr5:118698583-118702783	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv599567	chr5:118698983-118702783	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118690600-118700400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr5:118691800-118700400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
3	chr5:118692000-118707200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr5:118692800-118702000	Weak transcription	Aorta	Aorta
5	chr5:118693400-118706800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr5:118693800-118701600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:118694000-118707200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr5:118694400-118700400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:118694400-118702800	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr5:118694400-118704600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:118694600-118700400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
12	chr5:118694800-118701200	Weak transcription	Fetal Lung	lung
13	chr5:118694800-118701600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:118694800-118703800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:118695000-118701600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:118695000-118702000	Weak transcription	Colonic Mucosa	Colon
17	chr5:118695000-118702400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:118695200-118703000	Genic enhancers	Primary B cells from cord blood	blood
19	chr5:118695200-118706800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:118695400-118701600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:118695600-118700200	Genic enhancers	Primary T cells from cord blood	blood
22	chr5:118696000-118702400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:118696000-118704200	Weak transcription	Fetal Intestine Small	intestine
24	chr5:118696200-118700000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:118696200-118700800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:118696200-118701400	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:118696200-118702000	Weak transcription	Fetal Kidney	kidney
28	chr5:118696400-118703800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr5:118696600-118701000	Weak transcription	Stomach Mucosa	stomach
30	chr5:118696800-118701400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr5:118696800-118703000	Weak transcription	A549	lung
32	chr5:118696800-118704400	Enhancers	HMEC	breast
33	chr5:118697000-118701200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr5:118697000-118702000	Weak transcription	Small Intestine	intestine
35	chr5:118697000-118702400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:118697200-118701600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr5:118697200-118701800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr5:118697200-118702600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr5:118697400-118701200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:118697600-118700000	Enhancers	NHEK	skin
41	chr5:118697600-118700400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr5:118697600-118700400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr5:118697600-118701000	Weak transcription	HSMMtube	muscle
44	chr5:118697600-118701600	Weak transcription	Pancreas	Pancrea
45	chr5:118697600-118701600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr5:118697600-118701600	Weak transcription	NHDF-Ad	bronchial
47	chr5:118697600-118702000	Weak transcription	Right Atrium	heart
48	chr5:118697600-118702400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr5:118697600-118703000	Weak transcription	NHLF	lung
50	chr5:118697600-118703400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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