Variant report

Variant	rs32652
Chromosome Location	chr5:118705545-118705546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118690529..118693198-chr5:118704800..118707347,2	K562	blood:
2	chr5:118703898..118705619-chr5:118707402..118710351,2	MCF-7	breast:
3	chr5:118702891..118704960-chr5:118704985..118706852,2	K562	blood:
4	chr5:118697330..118698986-chr5:118703713..118705854,2	K562	blood:
5	chr5:118671639..118673344-chr5:118704484..118706218,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145779	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10077888	0.83[CEU][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap]
rs1155268	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1490756	1.00[LWK][hapmap]
rs1509141	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1509142	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1509144	0.84[JPT][hapmap]
rs1848554	0.89[JPT][hapmap]
rs192225	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs250302	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs250303	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs250304	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs257969	1.00[LWK][hapmap]
rs257973	1.00[LWK][hapmap]
rs2914210	1.00[LWK][hapmap]
rs32654	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs373253	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3797368	1.00[LWK][hapmap]
rs3813309	0.91[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs457106	1.00[LWK][hapmap]
rs4895369	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6595186	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6874848	0.86[ASW][hapmap];0.86[CEU][hapmap];0.95[CHB][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs924623	0.83[CEU][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118692000-118707200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr5:118693400-118706800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr5:118694000-118707200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr5:118695200-118706800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:118700200-118713800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:118700400-118705600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr5:118702200-118705800	Enhancers	K562	blood
8	chr5:118702200-118710200	Weak transcription	Fetal Lung	lung
9	chr5:118702400-118706800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:118702800-118706200	Weak transcription	Esophagus	oesophagus
11	chr5:118702800-118707400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:118702800-118710800	Weak transcription	Left Ventricle	heart
13	chr5:118702800-118713400	Weak transcription	Aorta	Aorta
14	chr5:118702800-118713400	Weak transcription	Fetal Stomach	stomach
15	chr5:118702800-118713600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:118702800-118714400	Weak transcription	Placenta	Placenta
17	chr5:118702800-118715000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:118702800-118715400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:118702800-118720000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:118702800-118720800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:118702800-118722400	Weak transcription	Spleen	Spleen
22	chr5:118702800-118723800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:118702800-118736000	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:118703000-118713000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:118703200-118706800	Weak transcription	NHLF	lung
26	chr5:118703600-118705800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr5:118703800-118705600	Enhancers	Primary T cells fromperipheralblood	blood
28	chr5:118703800-118706000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:118703800-118714000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:118704000-118705600	Weak transcription	NHDF-Ad	bronchial
31	chr5:118704200-118705600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr5:118704200-118706000	Weak transcription	HSMM	muscle
33	chr5:118704200-118706200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:118704200-118706200	Weak transcription	Fetal Heart	heart
35	chr5:118704200-118707400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr5:118704200-118708800	Weak transcription	Dnd41	blood
37	chr5:118704400-118705600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr5:118704400-118705600	Weak transcription	Osteobl	bone
39	chr5:118704400-118706400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:118704400-118706800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr5:118704400-118707200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
42	chr5:118704400-118709200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:118704400-118722800	Weak transcription	HMEC	breast
44	chr5:118704400-118728400	Weak transcription	Hela-S3	cervix
45	chr5:118704600-118706000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr5:118704600-118706000	Enhancers	Primary B cells from cord blood	blood
47	chr5:118704600-118706200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr5:118704600-118714200	Weak transcription	Adipose Nuclei	Adipose
49	chr5:118704600-118723400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr5:118704800-118705800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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