Variant report

Variant	rs1509142
Chromosome Location	chr5:118692465-118692466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118692399..118693980-chr5:118717576..118719923,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1155268	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1509141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs192225	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs250302	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs250303	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs32652	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs32654	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3813309	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895369	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6595186	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6874848	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16366	chr5:118692052-118702846	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118671200-118695400	Weak transcription	A549	lung
2	chr5:118682600-118693600	Weak transcription	Dnd41	blood
3	chr5:118684000-118692800	Weak transcription	K562	blood
4	chr5:118690400-118692600	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr5:118690600-118693200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr5:118690600-118693400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr5:118690600-118700400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:118690800-118693800	Active TSS	Rectal Smooth Muscle	rectum
9	chr5:118691000-118692600	Active TSS	H9 Cell Line	embryonic stem cell
10	chr5:118691000-118692600	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr5:118691000-118692600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:118691000-118692600	Flanking Active TSS	HUVEC	blood vessel
13	chr5:118691000-118692600	Active TSS	Osteobl	bone
14	chr5:118691000-118693000	Bivalent/Poised TSS	Psoas Muscle	Psoas
15	chr5:118691000-118693000	Active TSS	Right Ventricle	heart
16	chr5:118691000-118693400	Active TSS	HSMMtube	muscle
17	chr5:118691200-118692600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:118691200-118692600	Active TSS	Brain Angular Gyrus	brain
19	chr5:118691200-118692600	Active TSS	Brain Substantia Nigra	brain
20	chr5:118691200-118692600	Active TSS	Fetal Kidney	kidney
21	chr5:118691200-118692600	Active TSS	Ovary	ovary
22	chr5:118691200-118692600	Active TSS	HSMM	muscle
23	chr5:118691200-118692800	Active TSS	Aorta	Aorta
24	chr5:118691200-118693000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr5:118691200-118693000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr5:118691200-118693000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr5:118691200-118693000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
28	chr5:118691200-118693000	Active TSS	Fetal Muscle Trunk	muscle
29	chr5:118691200-118693200	Active TSS	Left Ventricle	heart
30	chr5:118691200-118693200	Active TSS	Right Atrium	heart
31	chr5:118691200-118693400	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr5:118691200-118694200	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr5:118691200-118694200	Active TSS	GM12878-XiMat	blood
34	chr5:118691400-118692600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr5:118691400-118692600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:118691400-118692600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:118691400-118692600	Active TSS	Fetal Heart	heart
38	chr5:118691400-118692600	Active TSS	Monocytes-CD14+_RO01746	blood
39	chr5:118691400-118692800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:118691400-118692800	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr5:118691400-118692800	Active TSS	Primary monocytes fromperipheralblood	blood
42	chr5:118691400-118692800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr5:118691400-118692800	Active TSS	Lung	lung
44	chr5:118691400-118692800	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr5:118691400-118693000	Active TSS	Colon Smooth Muscle	Colon
46	chr5:118691400-118693000	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr5:118691400-118693200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:118691400-118693200	Active TSS	Primary B cells from peripheral blood	blood
49	chr5:118691400-118693200	Active TSS	Colonic Mucosa	Colon
50	chr5:118691400-118693200	Active TSS	Duodenum Mucosa	Duodenum

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