Variant report
| Variant | rs11561397 |
|---|---|
| Chromosome Location | chr12:46428974-46428975 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:46424597..46426625-chr12:46428577..46431256,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10785599 | 0.93[ASN][1000 genomes] |
| rs10880887 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10880895 | 0.93[ASN][1000 genomes] |
| rs11183299 | 0.93[ASN][1000 genomes] |
| rs11183300 | 0.93[ASN][1000 genomes] |
| rs12826749 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2408456 | 0.93[ASN][1000 genomes] |
| rs2408457 | 0.93[ASN][1000 genomes] |
| rs2408458 | 0.93[ASN][1000 genomes] |
| rs4310671 | 0.93[ASN][1000 genomes] |
| rs4360754 | 0.90[ASN][1000 genomes] |
| rs4381422 | 0.93[ASN][1000 genomes] |
| rs6582588 | 0.93[ASN][1000 genomes] |
| rs7133776 | 0.93[ASN][1000 genomes] |
| rs7134238 | 0.90[ASN][1000 genomes] |
| rs7134559 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7301249 | 0.90[ASN][1000 genomes] |
| rs7301789 | 0.90[ASN][1000 genomes] |
| rs7305576 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7308284 | 0.85[ASN][1000 genomes] |
| rs7308463 | 0.93[ASN][1000 genomes] |
| rs7312384 | 0.91[ASN][1000 genomes] |
| rs7313085 | 0.90[ASN][1000 genomes] |
| rs7313611 | 0.89[ASN][1000 genomes] |
| rs7315714 | 0.93[ASN][1000 genomes] |
| rs7953165 | 0.93[ASN][1000 genomes] |
| rs7966125 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832397 | chr12:46265990-46453733 | Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | esv3436481 | chr12:46427785-46431983 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:46427200-46429000 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
