Variant report

Variant	rs7966125
Chromosome Location	chr12:46411940-46411941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46410714..46413083-chr12:46416525..46418084,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10785593	0.80[ASN][1000 genomes]
rs10785599	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10880871	0.80[ASN][1000 genomes]
rs10880879	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10880880	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10880884	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10880887	0.99[ASN][1000 genomes]
rs10880895	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11183243	0.80[ASN][1000 genomes]
rs11183268	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11183272	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11183299	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11183300	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11561397	0.85[ASN][1000 genomes]
rs12826749	0.97[ASN][1000 genomes]
rs1366024	0.80[ASN][1000 genomes]
rs2408456	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2408457	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2408458	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4310671	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4360754	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4381422	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6582588	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7133776	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7134238	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7134559	0.97[ASN][1000 genomes]
rs724909	0.80[ASN][1000 genomes]
rs7298703	0.80[ASN][1000 genomes]
rs7301249	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7301789	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7305576	0.87[ASN][1000 genomes]
rs7306229	0.80[ASN][1000 genomes]
rs7308284	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7308463	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7312384	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7313085	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7313611	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7315714	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7315731	0.80[ASN][1000 genomes]
rs7953165	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7967208	0.80[ASN][1000 genomes]
rs7970129	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7971993	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs997307	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832397	chr12:46265990-46453733	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46411800-46412000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links