Variant report

Variant	rs7134559
Chromosome Location	chr12:46419086-46419087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46413405..46416339-chr12:46416939..46419427,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1012642	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs10748438	0.82[YRI][hapmap]
rs10785599	0.89[ASN][1000 genomes]
rs10880871	0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs10880879	0.88[CHD][hapmap];0.86[JPT][hapmap]
rs10880880	0.81[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs10880884	0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs10880887	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10880895	0.89[ASN][1000 genomes]
rs11183243	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs11183272	0.90[JPT][hapmap]
rs11183299	0.82[ASN][1000 genomes]
rs11183300	0.89[ASN][1000 genomes]
rs11561397	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11574952	0.85[YRI][hapmap]
rs12314770	0.86[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap]
rs12826749	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1366024	0.81[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs17096380	1.00[LWK][hapmap];0.85[YRI][hapmap]
rs2408456	0.89[ASN][1000 genomes]
rs2408457	0.89[ASN][1000 genomes]
rs2408458	0.89[ASN][1000 genomes]
rs247918	0.84[JPT][hapmap]
rs247920	0.86[JPT][hapmap]
rs247929	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs247930	0.83[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.87[YRI][hapmap]
rs35115	0.86[CHD][hapmap];0.86[JPT][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];0.87[YRI][hapmap]
rs35117	0.81[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.87[YRI][hapmap]
rs35121	0.81[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];0.87[YRI][hapmap]
rs35125	0.81[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];0.87[YRI][hapmap]
rs4310671	0.89[ASN][1000 genomes]
rs4360754	0.86[ASN][1000 genomes]
rs4381422	0.89[ASN][1000 genomes]
rs6582588	0.89[ASN][1000 genomes]
rs7133776	0.89[ASN][1000 genomes]
rs7134238	0.87[ASN][1000 genomes]
rs724909	0.88[CHD][hapmap];0.81[JPT][hapmap]
rs7301249	0.86[ASN][1000 genomes]
rs7301789	0.86[ASN][1000 genomes]
rs7305576	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7306229	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7308284	0.99[ASN][1000 genomes]
rs7308463	0.89[ASN][1000 genomes]
rs7312384	0.88[ASN][1000 genomes]
rs7313085	0.86[ASN][1000 genomes]
rs7313611	0.86[ASN][1000 genomes]
rs7315714	0.89[ASN][1000 genomes]
rs7315731	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7953165	0.89[ASN][1000 genomes]
rs7966125	0.97[ASN][1000 genomes]
rs7970129	0.81[ASN][1000 genomes]
rs7971993	0.90[JPT][hapmap]
rs997307	0.81[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832397	chr12:46265990-46453733	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46417600-46419600	ZNF genes & repeats	Adipose Nuclei	Adipose

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