Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46410714..46413083-chr12:46416525..46418084,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10785593	0.82[AFR][1000 genomes]
rs10785599	0.89[ASN][1000 genomes]
rs10880879	0.82[ASN][1000 genomes]
rs10880880	0.82[ASN][1000 genomes]
rs10880884	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10880895	0.89[ASN][1000 genomes]
rs11183268	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11183272	0.81[ASN][1000 genomes]
rs11183299	0.82[ASN][1000 genomes]
rs11183300	0.89[ASN][1000 genomes]
rs11561397	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12826749	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2408456	0.89[ASN][1000 genomes]
rs2408457	0.89[ASN][1000 genomes]
rs2408458	0.89[ASN][1000 genomes]
rs4310671	0.89[ASN][1000 genomes]
rs4360754	0.86[ASN][1000 genomes]
rs4381422	0.89[ASN][1000 genomes]
rs6582588	0.89[ASN][1000 genomes]
rs7133776	0.89[ASN][1000 genomes]
rs7134238	0.87[ASN][1000 genomes]
rs7134559	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7301249	0.86[ASN][1000 genomes]
rs7301789	0.86[ASN][1000 genomes]
rs7305576	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7308284	0.97[ASN][1000 genomes]
rs7308463	0.89[ASN][1000 genomes]
rs7312384	0.88[ASN][1000 genomes]
rs7313085	0.86[ASN][1000 genomes]
rs7313611	0.86[ASN][1000 genomes]
rs7315714	0.89[ASN][1000 genomes]
rs7953165	0.89[ASN][1000 genomes]
rs7966125	0.99[ASN][1000 genomes]
rs7970129	0.84[ASN][1000 genomes]
rs7971993	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832397	chr12:46265990-46453733	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46412000-46413000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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