Variant report

Variant	rs7970129
Chromosome Location	chr12:46405050-46405051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46384571..46386329-chr12:46403356..46406052,2	MCF-7	breast:
2	chr12:46383439..46386872-chr12:46402776..46407308,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139218	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1012642	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10785593	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10880871	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10880875	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10880879	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10880880	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10880884	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10880887	0.84[ASN][1000 genomes]
rs11183241	0.93[ASN][1000 genomes]
rs11183243	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11183268	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11183272	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12826749	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1366024	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs247917	0.80[ASN][1000 genomes]
rs247918	0.80[ASN][1000 genomes]
rs247919	0.83[ASN][1000 genomes]
rs247920	0.83[ASN][1000 genomes]
rs247929	0.87[ASN][1000 genomes]
rs35121	0.85[ASN][1000 genomes]
rs35122	0.81[ASN][1000 genomes]
rs35125	0.81[ASN][1000 genomes]
rs7134559	0.81[ASN][1000 genomes]
rs724909	0.94[ASN][1000 genomes]
rs7298703	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7306229	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7308284	0.82[ASN][1000 genomes]
rs7311198	0.85[AMR][1000 genomes]
rs7315731	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7966125	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7967208	0.94[ASN][1000 genomes]
rs7971993	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs997307	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832397	chr12:46265990-46453733	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links