Variant report

Variant	rs11563331
Chromosome Location	chr7:127000591-127000592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:126989599..126991125-chr7:126999110..127001691,2	K562	blood:
2	chr7:126992206..126994276-chr7:126998893..127000633,3	K562	blood:
3	chr7:126999623..127001403-chr7:127005210..127006767,2	MCF-7	breast:
4	chr7:126999289..127001644-chr7:127001695..127003278,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF800-2	chr7:126999844-127004813	NONHSAT123138

Variant related genes	Relation type
ENSG00000224138	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11563465	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563640	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12532298	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12533653	0.92[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12535410	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12706781	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706782	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13222357	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13223068	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13234675	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13236819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13239338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13239894	0.80[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13246076	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1345206	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1361947	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1361948	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1557639	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17862361	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17862375	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17864191	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17864199	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17864200	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17864202	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17864920	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17867841	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17869209	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1819774	0.92[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1894725	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1894726	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2106175	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2402856	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55691590	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56317753	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62468916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6957751	0.80[ASN][1000 genomes]
rs6978075	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017145	chr7:126995304-127015459	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126984400-127000800	Weak transcription	HSMMtube	muscle
2	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
3	chr7:126988200-127001000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:126988400-127000600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:126988400-127000600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:126988400-127000600	Weak transcription	Fetal Intestine Large	intestine
7	chr7:126988400-127000800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr7:126988400-127000800	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:126988400-127000800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr7:126988400-127000800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:126988400-127001000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:126988400-127001000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:126988400-127001000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:126988400-127001000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:126988400-127001000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:126988400-127001000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:126988400-127001000	Weak transcription	Aorta	Aorta
18	chr7:126988400-127001000	Weak transcription	Brain Angular Gyrus	brain
19	chr7:126988400-127001000	Weak transcription	Esophagus	oesophagus
20	chr7:126988400-127001000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:126988400-127001000	Weak transcription	Fetal Stomach	stomach
22	chr7:126988400-127001000	Weak transcription	Left Ventricle	heart
23	chr7:126988400-127001000	Weak transcription	Lung	lung
24	chr7:126988400-127001000	Weak transcription	Right Ventricle	heart
25	chr7:126988400-127001000	Weak transcription	Thymus	Thymus
26	chr7:126988400-127001000	Weak transcription	NH-A	brain
27	chr7:126988400-127001000	Weak transcription	NHLF	lung
28	chr7:126988400-127001200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:126988400-127002200	Weak transcription	Fetal Heart	heart
30	chr7:126988400-127004400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:126988400-127006400	Weak transcription	Psoas Muscle	Psoas
32	chr7:126988400-127012600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:126988400-127013000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:126988400-127013000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr7:126988400-127013200	Weak transcription	NHEK	skin
36	chr7:126988400-127013400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr7:126988400-127014000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
39	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
41	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
42	chr7:126988600-127000600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:126988600-127000800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:126988600-127001000	Weak transcription	Fetal Lung	lung
45	chr7:126988600-127007000	Weak transcription	A549	lung
46	chr7:126988600-127013400	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:126988800-127005000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
49	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr7:126992800-127000600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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