Variant report

Variant	rs17864920
Chromosome Location	chr7:127036613-127036614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:127036303-127036712	HL-60	blood:	n/a	n/a
2	ELF1	chr7:127036249-127036695	K562	blood:	n/a	n/a
3	PML	chr7:127036174-127036719	GM12878	blood:	n/a	n/a
4	CEBPB	chr7:127036165-127036822	GM12878	blood:	n/a	n/a
5	CBX3	chr7:127036158-127036645	K562	blood:	n/a	n/a
6	MYC	chr7:127036420-127036615	MCF10A-Er-Src	breast:	n/a	n/a
7	NFATC1	chr7:127036234-127036721	GM12878	blood:	n/a	n/a
8	SPI1	chr7:127036286-127036842	HL-60	blood:	n/a	n/a
9	ATF2	chr7:127036229-127036695	GM12878	blood:	n/a	n/a
10	FOXM1	chr7:127036137-127036691	GM12878	blood:	n/a	n/a
11	CREB1	chr7:127036313-127036683	GM12878	blood:	n/a	n/a
12	RUNX3	chr7:127036109-127036738	GM12878	blood:	n/a	n/a
13	NFIC	chr7:127036128-127036782	GM12878	blood:	n/a	n/a
14	ATF2	chr7:127036189-127036772	GM12878	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:126988173..126990960-chr7:127036333..127038260,2	K562	blood:
2	chr7:126991047..126993006-chr7:127034690..127037263,2	K562	blood:
3	chr7:127035320..127037674-chr7:127043618..127045228,2	K562	blood:
4	chr7:127031701..127034064-chr7:127034316..127037068,3	MCF-7	breast:
5	chr7:127030420..127033990-chr7:127034934..127040808,8	MCF-7	breast:
6	chr7:127036421..127038438-chr7:127044881..127046557,2	MCF-7	breast:
7	chr7:126987437..126990960-chr7:127034932..127038867,5	K562	blood:

No data

Variant related genes	Relation type
ZNF800	TF binding region
ENSG00000224138	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10243318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10250993	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11563331	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11563457	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563465	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11563640	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12532298	0.84[EUR][1000 genomes]
rs12533653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12535410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706781	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12706794	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13222357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13223068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234675	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13236819	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13239338	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13239894	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13246076	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361947	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1361948	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419408	0.84[CEU][hapmap]
rs1557639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17862361	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17862375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17864191	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17864199	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17864200	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17864202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17867841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17869209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819774	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1894725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2106175	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402856	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs55691590	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56317753	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62468916	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6947541	0.82[ASN][1000 genomes]
rs6957751	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6978075	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9632759	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127036000-127036800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr7:127036200-127036800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr7:127036200-127036800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr7:127036600-127036800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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