Variant report

Variant	rs13246076
Chromosome Location	chr7:127056645-127056646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127044593..127047117-chr7:127056262..127057766,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10243318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10250993	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11563331	0.92[CEU][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11563457	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563465	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11563640	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12532298	0.84[EUR][1000 genomes]
rs12533653	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12535410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706781	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12706794	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13222357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13223068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234675	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13236819	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13239338	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13239894	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1345206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361947	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1361948	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419408	0.84[CEU][hapmap]
rs1557639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17862361	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17862375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17864191	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17864199	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17864200	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17864202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17864920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866820	1.00[YRI][hapmap]
rs17867841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17869209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819774	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1894725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894726	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2106175	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402856	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs55691590	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56317753	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62468916	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6947541	0.82[ASN][1000 genomes]
rs6957751	1.00[CHB][hapmap]
rs6978075	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9632759	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127046600-127058400	Weak transcription	Pancreas	Pancrea
2	chr7:127051400-127058600	Enhancers	Primary B cells from peripheral blood	blood
3	chr7:127052800-127058000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr7:127054600-127056800	Enhancers	Primary T cells from cord blood	blood
5	chr7:127054600-127058400	Enhancers	Primary B cells from cord blood	blood
6	chr7:127054800-127058000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr7:127055400-127058200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:127055600-127056800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:127055600-127056800	Weak transcription	GM12878-XiMat	blood
10	chr7:127056000-127057000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr7:127056000-127059200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr7:127056200-127057000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:127056400-127056800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr7:127056600-127057000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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