Variant report

Variant	rs1894726
Chromosome Location	chr7:127034445-127034446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr7:127034327-127034471	HepG2	liver:	n/a	n/a
2	POLR2A	chr7:127034295-127034639	MCF10A-Er-Src	breast:	n/a	n/a
3	MXI1	chr7:127030780-127034451	SK-N-SH	brain:	n/a	chr7:127033388-127033397

No.	Distal block	Cell Line	Cell type
1	chr7:127028627..127034604-chr7:127290902..127294330,10	K562	blood:
2	chr7:126980512..126983635-chr7:127032976..127036223,3	K562	blood:
3	chr7:127031701..127034064-chr7:127034316..127037068,3	MCF-7	breast:
4	chr7:127030656..127034603-chr7:127225190..127230310,7	MCF-7	breast:

Variant related genes	Relation type
ZNF800	TF binding region
ENSG00000197157	Chromatin interaction
ENSG00000179562	Chromatin interaction
ENSG00000240790	Chromatin interaction
ENSG00000004059	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10243318	0.82[ASN][1000 genomes]
rs11563330	0.82[ASN][1000 genomes]
rs11563331	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11563465	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11563640	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12532298	0.84[EUR][1000 genomes]
rs12533653	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12535410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706781	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12706782	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222357	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13223068	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234675	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13236819	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13239338	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13239894	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13246076	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345206	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361947	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1361948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557639	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17862361	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17862375	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17864191	0.81[EUR][1000 genomes]
rs17864199	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17864200	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17864202	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17864920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866820	0.81[AFR][1000 genomes]
rs17867841	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17869209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1819774	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1894725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2106175	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402856	0.85[EUR][1000 genomes]
rs55691590	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56317753	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62468916	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6947541	0.82[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127033800-127036200	Weak transcription	K562	blood
2	chr7:127034000-127036200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:127034200-127034600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:127034200-127035200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr7:127034200-127036000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:127034200-127036200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:127034200-127036200	Weak transcription	GM12878-XiMat	blood
8	chr7:127034200-127036400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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