Variant report

Variant	rs1419408
Chromosome Location	chr7:127111086-127111087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127108647..127111372-chr7:127114736..127117727,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226770	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10487484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10487494	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes]
rs11975345	0.83[YRI][hapmap]
rs12533653	0.83[CEU][hapmap]
rs12535410	0.84[CEU][hapmap]
rs12536698	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12706782	0.84[CEU][hapmap]
rs12706803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13222357	0.84[CEU][hapmap]
rs13223068	0.83[CEU][hapmap]
rs13227138	0.86[ASN][1000 genomes]
rs13235029	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13244426	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes]
rs13244709	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13247976	0.86[ASN][1000 genomes]
rs13309235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1345206	0.84[CEU][hapmap]
rs1557639	0.84[CEU][hapmap]
rs17660187	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17862375	0.84[CEU][hapmap]
rs17864202	0.84[CEU][hapmap]
rs17864920	0.84[CEU][hapmap]
rs17867841	0.84[CEU][hapmap]
rs1819774	0.83[CEU][hapmap]
rs33973710	0.82[ASN][1000 genomes]
rs34121113	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34195583	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34211107	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34365152	0.86[ASN][1000 genomes]
rs34388330	0.86[ASN][1000 genomes]
rs34599926	0.82[ASN][1000 genomes]
rs34814259	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34881339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35120956	0.82[ASN][1000 genomes]
rs35144279	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35528098	0.86[ASN][1000 genomes]
rs35872516	0.82[ASN][1000 genomes]
rs3752619	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs3808111	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3808115	1.00[JPT][hapmap]
rs58451280	0.82[ASN][1000 genomes]
rs62468943	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62483172	0.86[ASN][1000 genomes]
rs6957054	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6964793	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs746238	0.82[ASN][1000 genomes]
rs7811506	0.82[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127097400-127116000	Weak transcription	Pancreas	Pancrea
2	chr7:127111000-127125000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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