Variant report
| Variant | rs11975345 |
|---|---|
| Chromosome Location | chr7:127114729-127114730 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:43)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:43 , 50 per page) page:
1
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226770 | TF binding region |
| ENSG00000226770 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10487486 | 0.83[CHB][hapmap] |
| rs11975300 | 0.82[CHB][hapmap] |
| rs11982078 | 0.82[CHB][hapmap] |
| rs13220954 | 0.83[CHB][hapmap] |
| rs13233424 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13235029 | 0.83[AFR][1000 genomes] |
| rs13243596 | 0.82[CHB][hapmap] |
| rs13309123 | 0.83[CHB][hapmap] |
| rs13309424 | 0.83[CHB][hapmap] |
| rs1419408 | 0.83[YRI][hapmap] |
| rs1419409 | 0.82[CHB][hapmap] |
| rs17656920 | 0.82[CHB][hapmap] |
| rs17656985 | 0.83[CHB][hapmap] |
| rs17867852 | 0.82[JPT][hapmap] |
| rs1894722 | 0.83[CHB][hapmap] |
| rs62468936 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6949899 | 0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6957054 | 0.83[AFR][1000 genomes] |
| rs6965137 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6966790 | 0.83[CHB][hapmap] |
| rs6967546 | 0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7783988 | 0.81[CHB][hapmap] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:127097400-127116000 | Weak transcription | Pancreas | Pancrea |
| 2 | chr7:127111000-127125000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
