Variant report

Variant	rs62468943
Chromosome Location	chr7:127145545-127145546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127139556..127142384-chr7:127144529..127146232,2	K562	blood:
2	7:126085913-126088095..7:127145046-127148035	GM12878	blood:
3	chr7:127144006..127145974-chr7:127149177..127151061,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10487484	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10487494	1.00[ASN][1000 genomes]
rs12536698	1.00[ASN][1000 genomes]
rs12706803	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13227138	0.85[ASN][1000 genomes]
rs13235029	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13244426	1.00[ASN][1000 genomes]
rs13244709	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13247976	1.00[ASN][1000 genomes]
rs13309235	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1419408	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17660187	0.85[ASN][1000 genomes]
rs33973710	0.96[ASN][1000 genomes]
rs34121113	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34188289	0.82[ASN][1000 genomes]
rs34195583	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34211107	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34365152	1.00[ASN][1000 genomes]
rs34388330	1.00[ASN][1000 genomes]
rs34599926	0.96[ASN][1000 genomes]
rs34814259	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34881339	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35120956	0.82[ASN][1000 genomes]
rs35144279	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35528098	1.00[ASN][1000 genomes]
rs35872516	0.82[ASN][1000 genomes]
rs3752619	0.93[ASN][1000 genomes]
rs3808111	0.82[ASN][1000 genomes]
rs58451280	0.82[ASN][1000 genomes]
rs62481380	0.82[ASN][1000 genomes]
rs62483172	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957054	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6964793	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746238	0.82[ASN][1000 genomes]
rs7808161	0.82[ASN][1000 genomes]
rs7811506	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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