Variant report

Variant	rs7811506
Chromosome Location	chr7:127266295-127266296
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127265947..127268733-chr7:127290449..127292209,2	MCF-7	breast:
2	chr7:127259118..127261158-chr7:127265600..127267566,2	K562	blood:
3	chr7:127259658..127262602-chr7:127265191..127267100,2	K562	blood:

Variant related genes	Relation type
ENSG00000240790	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10487484	0.81[ASN][1000 genomes]
rs10487494	0.96[ASN][1000 genomes]
rs10487496	0.80[EUR][1000 genomes]
rs12536698	0.96[ASN][1000 genomes]
rs12706803	0.89[ASN][1000 genomes]
rs13227138	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13235029	0.89[ASN][1000 genomes]
rs13235596	0.80[EUR][1000 genomes]
rs13244426	0.96[ASN][1000 genomes]
rs13247976	0.96[ASN][1000 genomes]
rs13309235	0.81[ASN][1000 genomes]
rs1419408	0.82[ASN][1000 genomes]
rs17660187	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17662800	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17718364	0.82[EUR][1000 genomes]
rs17730185	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17730294	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2272374	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs33973710	0.92[ASN][1000 genomes]
rs34121113	0.89[ASN][1000 genomes]
rs34188289	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34195583	0.89[ASN][1000 genomes]
rs34211107	0.96[ASN][1000 genomes]
rs34365152	0.96[ASN][1000 genomes]
rs34388330	0.96[ASN][1000 genomes]
rs34599926	1.00[ASN][1000 genomes]
rs34814259	0.89[ASN][1000 genomes]
rs34844752	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34881339	0.81[ASN][1000 genomes]
rs35120956	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35144279	0.89[ASN][1000 genomes]
rs35528098	0.96[ASN][1000 genomes]
rs35640048	0.85[ASN][1000 genomes]
rs35872516	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36046498	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3752619	0.89[ASN][1000 genomes]
rs3757785	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3808096	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3808111	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3808115	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58451280	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62468943	0.96[ASN][1000 genomes]
rs62481380	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62481384	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62483172	0.96[ASN][1000 genomes]
rs6957054	0.89[ASN][1000 genomes]
rs6964793	0.96[ASN][1000 genomes]
rs746238	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7808161	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1016143	chr7:127251359-127726762	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127261000-127269600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:127261400-127267200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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