Variant report

Variant	rs33973710
Chromosome Location	chr7:127222521-127222522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:126985391..126987885-chr7:127220985..127222536,2	MCF-7	breast:
2	chr7:127203098..127205037-chr7:127222496..127224357,2	MCF-7	breast:
3	chr7:127030414..127032802-chr7:127220953..127224227,3	K562	blood:
4	chr7:127210811..127213532-chr7:127222493..127224995,2	K562	blood:
5	chr7:127193697..127196034-chr7:127222065..127224629,3	K562	blood:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10487484	0.81[ASN][1000 genomes]
rs10487494	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12536698	0.96[ASN][1000 genomes]
rs12706803	0.89[ASN][1000 genomes]
rs13227138	0.81[ASN][1000 genomes]
rs13235029	0.89[ASN][1000 genomes]
rs13244426	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13247976	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13309235	0.81[ASN][1000 genomes]
rs1419408	0.82[ASN][1000 genomes]
rs17660187	0.81[ASN][1000 genomes]
rs34121113	0.89[ASN][1000 genomes]
rs34195583	0.89[ASN][1000 genomes]
rs34211107	0.96[ASN][1000 genomes]
rs34365152	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34388330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34599926	0.92[ASN][1000 genomes]
rs34814259	0.89[ASN][1000 genomes]
rs34881339	0.81[ASN][1000 genomes]
rs35144279	0.89[ASN][1000 genomes]
rs35528098	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3752619	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468943	0.96[ASN][1000 genomes]
rs62483172	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6957054	0.89[ASN][1000 genomes]
rs6964793	0.96[ASN][1000 genomes]
rs7811506	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127218000-127222800	Weak transcription	Hela-S3	cervix
2	chr7:127218000-127223000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:127218000-127223200	Strong transcription	Primary B cells from cord blood	blood
4	chr7:127218000-127223400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:127218000-127223400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr7:127218200-127223200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:127218200-127223600	Strong transcription	Primary hematopoietic stem cells	blood
8	chr7:127218200-127223600	Strong transcription	Fetal Intestine Large	intestine
9	chr7:127218200-127223800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:127218800-127223400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:127219000-127223400	Strong transcription	K562	blood
12	chr7:127219200-127223600	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr7:127219600-127222800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr7:127219800-127223200	Genic enhancers	Liver	Liver
15	chr7:127220200-127223600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:127220200-127224200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr7:127220400-127223600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
18	chr7:127220400-127223600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr7:127220600-127223200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:127220800-127223200	Strong transcription	NHEK	skin
21	chr7:127220800-127223200	Strong transcription	Osteobl	bone
22	chr7:127220800-127223400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:127220800-127223600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:127220800-127223600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:127220800-127223800	Genic enhancers	Brain Cingulate Gyrus	brain
26	chr7:127220800-127224000	Genic enhancers	Fetal Stomach	stomach
27	chr7:127221000-127222600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr7:127221000-127223200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr7:127221000-127223200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:127221000-127223200	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:127221000-127223400	Genic enhancers	Primary monocytes fromperipheralblood	blood
32	chr7:127221000-127223400	Strong transcription	Aorta	Aorta
33	chr7:127221000-127223400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
34	chr7:127221000-127223400	Genic enhancers	Fetal Brain Female	brain
35	chr7:127221000-127223600	Genic enhancers	Brain Angular Gyrus	brain
36	chr7:127221000-127223600	Genic enhancers	Brain Inferior Temporal Lobe	brain
37	chr7:127221000-127223800	Genic enhancers	Dnd41	blood
38	chr7:127221000-127224000	Genic enhancers	Placenta	Placenta
39	chr7:127221000-127224200	Genic enhancers	Primary T cells fromperipheralblood	blood
40	chr7:127221000-127224200	Enhancers	Fetal Heart	heart
41	chr7:127221200-127222600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:127221200-127222600	Genic enhancers	HSMMtube	muscle
43	chr7:127221200-127223400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:127221200-127223400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr7:127221200-127223400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:127221200-127223400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:127221200-127223400	Strong transcription	A549	lung
48	chr7:127221200-127223400	Strong transcription	HUVEC	blood vessel
49	chr7:127221200-127223600	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr7:127221200-127223600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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