Variant report

Variant	rs12706793
Chromosome Location	chr7:127072140-127072141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127030999..127034277-chr7:127071570..127073569,4	K562	blood:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10243318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10250993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279667	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954154	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563330	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.81[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563465	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563640	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11971734	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12533653	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12535410	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12706781	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12706782	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12706794	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222357	1.00[CHB][hapmap]
rs13223068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13234675	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13239894	1.00[JPT][hapmap]
rs1345206	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1557639	1.00[CHB][hapmap]
rs17862361	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17862375	1.00[CHB][hapmap]
rs17864191	1.00[CHB][hapmap]
rs17864199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17864200	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17864202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17864920	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17867841	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2106175	1.00[JPT][hapmap]
rs2402856	1.00[CHB][hapmap]
rs6947541	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6957751	1.00[CHB][hapmap]
rs6978075	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9632759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519554	chr7:127072140-127072260	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12706793	KCP	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127070400-127072400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr7:127070800-127072200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr7:127071000-127072400	Enhancers	Primary T cells from cord blood	blood

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