Variant report

Variant	rs11563459
Chromosome Location	chr7:127053001-127053002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000106328	Chromatin interaction
ENSG00000004059	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10253460	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11539276	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11982344	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17713208	0.82[ASN][1000 genomes]
rs17862359	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17863277	0.81[ASN][1000 genomes]
rs17864192	0.81[ASN][1000 genomes]
rs17864212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17865261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285337	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73233010	0.82[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127046600-127058400	Weak transcription	Pancreas	Pancrea
2	chr7:127049200-127053200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:127050600-127053200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:127051400-127054000	Enhancers	Primary B cells from cord blood	blood
5	chr7:127051400-127058600	Enhancers	Primary B cells from peripheral blood	blood
6	chr7:127052400-127053800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:127052400-127055600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:127052800-127053600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr7:127052800-127054200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr7:127052800-127058000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr7:127053000-127053400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
12	chr7:127053000-127053800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr7:127053000-127054200	Enhancers	Primary T cells from cord blood	blood
14	chr7:127053000-127054600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr7:127053000-127056000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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