Variant report

Variant	rs11568856
Chromosome Location	chr4:110835054-110835055
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110621463..110624410-chr4:110832783..110835223,2	K562	blood:

Variant related genes	Relation type
ENSG00000138794	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1024599	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098053	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098054	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11568835	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11568942	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11569057	0.81[AMR][1000 genomes]
rs12499579	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502241	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12504641	0.85[AMR][1000 genomes]
rs2237044	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237050	0.83[AMR][1000 genomes]
rs28405885	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3756263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756265	0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756266	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756267	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822287	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41475347	0.91[AFR][1000 genomes]
rs4698802	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6818260	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7668015	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7677295	0.82[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3368651	chr4:110835039-110835545	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110832800-110836200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:110833400-110835600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:110833600-110835200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:110833600-110835400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:110833600-110836000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:110833600-110838000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:110833800-110835800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:110833800-110835800	Active TSS	Right Ventricle	heart
9	chr4:110833800-110836000	Active TSS	Left Ventricle	heart
10	chr4:110833800-110836000	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr4:110833800-110836400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr4:110833800-110836400	Active TSS	Right Atrium	heart
13	chr4:110833800-110836400	Active TSS	HSMMtube	muscle
14	chr4:110833800-110837600	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr4:110834000-110835400	Active TSS	Fetal Intestine Small	intestine
16	chr4:110834000-110835800	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr4:110834000-110837200	Active TSS	Pancreas	Pancrea
18	chr4:110834000-110837400	Active TSS	Psoas Muscle	Psoas
19	chr4:110834000-110838400	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr4:110834200-110835400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:110834200-110835800	Active TSS	Fetal Intestine Large	intestine
22	chr4:110834200-110836600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:110834200-110837000	Active TSS	Fetal Muscle Trunk	muscle
24	chr4:110834200-110837200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:110834400-110835400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:110834400-110844800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:110834600-110835400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:110834600-110835600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:110834600-110835800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:110834600-110836400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:110834600-110836400	Weak transcription	A549	lung
32	chr4:110834600-110836600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr4:110834600-110837200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr4:110834600-110841800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:110834800-110835200	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr4:110834800-110835200	Enhancers	Primary hematopoietic stem cells	blood
37	chr4:110834800-110835400	Enhancers	K562	blood
38	chr4:110834800-110835600	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr4:110834800-110835800	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr4:110834800-110835800	Flanking Active TSS	Fetal Heart	heart
41	chr4:110834800-110837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr4:110835000-110835200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:110835000-110835200	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:110835000-110835400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:110835000-110835600	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr4:110835000-110835600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links