Variant report

Variant	rs4698802
Chromosome Location	chr4:110889935-110889936
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110887831..110890473-chr4:110895882..110898637,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1024599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11098053	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11098054	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11568835	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11568856	1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11568942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11569057	0.91[AMR][1000 genomes]
rs12499579	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12502156	1.00[AFR][1000 genomes]
rs12502241	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2237044	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2237050	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28405885	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3756263	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3756265	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3756266	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3756267	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3822287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6818260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7668015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7677295	0.81[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
3	chr4:110884200-110893600	Weak transcription	Fetal Heart	heart
4	chr4:110885800-110897200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
6	chr4:110888000-110890400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:110888000-110891200	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:110888200-110890600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:110888200-110890600	Enhancers	HMEC	breast
10	chr4:110888200-110891000	Enhancers	HUVEC	blood vessel
11	chr4:110888200-110893800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:110888600-110890800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr4:110888800-110891200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:110889000-110890400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr4:110889000-110890600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr4:110889000-110891000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:110889000-110891600	Enhancers	Primary B cells from peripheral blood	blood
18	chr4:110889000-110891800	Enhancers	Primary hematopoietic stem cells	blood
19	chr4:110889000-110894000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:110889400-110891000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr4:110889400-110891800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr4:110889600-110890200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:110889600-110890400	Enhancers	NHEK	skin
24	chr4:110889600-110890600	Enhancers	GM12878-XiMat	blood
25	chr4:110889600-110891000	Weak transcription	Placenta Amnion	Placenta Amnion

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