Variant report

Variant	rs11568942
Chromosome Location	chr4:110882996-110882997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110875646..110878215-chr4:110881372..110883545,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1024599	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11098053	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11098054	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11568835	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11568856	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12499579	0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12502241	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12504641	0.82[AMR][1000 genomes]
rs12507356	0.89[MEX][hapmap]
rs2074391	0.89[MEX][hapmap]
rs2237044	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28405885	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3733627	0.89[MEX][hapmap]
rs3756263	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3756265	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3756266	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3756267	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3822286	0.89[MEX][hapmap]
rs3822287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4698802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6818260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7668015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7677295	0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv820232	chr4:110882124-110883098	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110869600-110888000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:110872000-110883600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:110872000-110885200	Weak transcription	Left Ventricle	heart
5	chr4:110874400-110889000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
7	chr4:110879400-110883000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:110880200-110883600	Strong transcription	Skeletal Muscle Female	skeletal muscle

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