Variant report

Variant	rs2237050
Chromosome Location	chr4:110900818-110900819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110734994..110736731-chr4:110899705..110902509,2	K562	blood:
2	chr4:110899256..110901567-chr4:110902882..110905571,2	K562	blood:
3	chr4:110899444..110901234-chr4:110903435..110906853,3	MCF-7	breast:
4	chr4:110811671..110813373-chr4:110899497..110901188,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272795	Chromatin interaction
ENSG00000109534	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1024599	0.85[AMR][1000 genomes]
rs10434002	1.00[EUR][1000 genomes]
rs11098053	0.83[AMR][1000 genomes]
rs11098054	0.85[AMR][1000 genomes]
rs11098062	0.85[AMR][1000 genomes]
rs11568835	0.83[AMR][1000 genomes]
rs11568856	0.83[AMR][1000 genomes]
rs11569057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11569093	0.88[JPT][hapmap];0.85[AMR][1000 genomes]
rs12499579	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12502156	1.00[AFR][1000 genomes]
rs12502241	0.85[AMR][1000 genomes]
rs12511518	0.85[AMR][1000 genomes]
rs2074391	0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs2237044	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2237046	1.00[EUR][1000 genomes]
rs2237047	1.00[EUR][1000 genomes]
rs3756263	0.83[AMR][1000 genomes]
rs3756265	0.83[AMR][1000 genomes]
rs3756266	0.83[AMR][1000 genomes]
rs3756267	0.83[AMR][1000 genomes]
rs3796940	0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs3796941	0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs3822287	0.83[AMR][1000 genomes]
rs4698757	0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs4698802	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6818260	0.85[AMR][1000 genomes]
rs7668015	0.83[AMR][1000 genomes]
rs7677295	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
3	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
4	chr4:110893800-110909600	Weak transcription	Fetal Heart	heart
5	chr4:110895000-110909600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:110898000-110906600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:110899400-110909800	Weak transcription	Right Atrium	heart
9	chr4:110899600-110901000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:110899600-110902200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:110899600-110902200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:110899600-110902800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:110900000-110901400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:110900000-110901600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:110900000-110901600	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:110900200-110901000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:110900200-110901000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:110900200-110901200	Enhancers	NH-A	brain
19	chr4:110900400-110901600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:110900600-110901000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:110900800-110901400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:110900800-110901400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr4:110900800-110901400	Enhancers	Osteobl	bone
24	chr4:110900800-110902200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr4:110900800-110902200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:110900800-110902200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:110900800-110902400	Enhancers	NHEK	skin
28	chr4:110900800-110902600	Enhancers	HMEC	breast
29	chr4:110900800-110902600	Enhancers	HSMM	muscle
30	chr4:110900800-110902800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:110900800-110905000	Weak transcription	Monocytes-CD14+_RO01746	blood

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