Variant report

Variant	rs11569093
Chromosome Location	chr4:110920299-110920300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:110919679..110920650-chr4:111437348..111438078,3	MCF-7	breast:
2	chr4:110919650..110920356-chr4:111435760..111436727,2	MCF-7	breast:
3	chr4:110919705..110920572-chr4:111506934..111507598,2	MCF-7	breast:
4	chr4:110918900..110921696-chr4:110925248..110926781,2	K562	blood:
5	chr4:110920067..110920971-chr4:111437280..111437927,2	K562	blood:
6	chr4:110920202..110921754-chr4:110921805..110924269,2	K562	blood:
7	chr4:110920018..110920622-chr4:111435741..111436686,5	K562	blood:
8	chr4:110919695..110920613-chr4:111429733..111430949,6	K562	blood:
9	chr4:110919633..110920604-chr4:111438733..111439372,2	K562	blood:
10	chr4:110919693..110920830-chr4:111431515..111432376,4	K562	blood:
11	chr4:110919744..110920598-chr4:111439423..111440711,5	K562	blood:
12	chr4:110919674..110920593-chr4:111431796..111432759,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000250511	Chromatin interaction
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11098059	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11098062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11569057	0.88[JPT][hapmap];0.87[AMR][1000 genomes]
rs11569149	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506362	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12507356	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12511518	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648439	0.85[AMR][1000 genomes]
rs2074391	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2237050	0.88[JPT][hapmap];0.85[AMR][1000 genomes]
rs3733627	0.94[AMR][1000 genomes]
rs3796940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822286	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4698757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698804	1.00[ASN][1000 genomes]
rs721413	0.82[AMR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:110901400-110920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:110906800-110920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:110907000-110932400	Weak transcription	Psoas Muscle	Psoas
6	chr4:110907800-110927400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:110910200-110920400	Weak transcription	Fetal Intestine Small	intestine
8	chr4:110910400-110935200	Weak transcription	Pancreas	Pancrea
9	chr4:110910600-110929800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:110910800-110926800	Weak transcription	Fetal Heart	heart
11	chr4:110918600-110920800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:110919000-110935200	Weak transcription	Left Ventricle	heart
13	chr4:110920200-110920400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr4:110920200-110920600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:110920200-110920600	Enhancers	Dnd41	blood
16	chr4:110920200-110921000	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr4:110920200-110921000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr4:110920200-110921000	Enhancers	GM12878-XiMat	blood
19	chr4:110920200-110921000	Enhancers	HepG2	liver
20	chr4:110920200-110921200	Enhancers	Liver	Liver

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