Variant report

Variant	rs12648439
Chromosome Location	chr4:110951545-110951546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10488883	0.84[AMR][1000 genomes]
rs11098062	0.85[AMR][1000 genomes]
rs11569093	0.85[AMR][1000 genomes]
rs11569149	0.85[AMR][1000 genomes]
rs12511518	0.85[AMR][1000 genomes]
rs2074391	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3733624	0.84[AMR][1000 genomes]
rs3796940	0.89[AMR][1000 genomes]
rs3796941	0.89[AMR][1000 genomes]
rs4698757	0.81[AMR][1000 genomes]
rs721413	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110949600-110953600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:110951000-110951600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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