Variant report
| Variant | rs721413 |
|---|---|
| Chromosome Location | chr4:110947608-110947609 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:110943212..110945000-chr4:110945421..110947872,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10000762 | 1.00[CEU][hapmap] |
| rs10008969 | 1.00[CEU][hapmap] |
| rs10011256 | 1.00[CEU][hapmap] |
| rs10021246 | 1.00[CEU][hapmap] |
| rs10021699 | 1.00[CEU][hapmap] |
| rs10024160 | 1.00[CEU][hapmap] |
| rs10025706 | 1.00[CEU][hapmap] |
| rs10029765 | 1.00[CEU][hapmap] |
| rs10488883 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11098059 | 0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes] |
| rs11098062 | 0.82[AMR][1000 genomes] |
| rs11569093 | 0.82[AMR][1000 genomes] |
| rs11569149 | 0.86[AMR][1000 genomes] |
| rs12506362 | 0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes] |
| rs12507356 | 0.90[CHB][hapmap];0.89[JPT][hapmap] |
| rs12511518 | 0.82[AMR][1000 genomes] |
| rs12648439 | 0.88[AMR][1000 genomes] |
| rs17040963 | 1.00[CEU][hapmap] |
| rs17041311 | 1.00[CEU][hapmap] |
| rs17041322 | 1.00[CEU][hapmap] |
| rs1860131 | 1.00[CEU][hapmap] |
| rs2074391 | 0.88[AMR][1000 genomes] |
| rs3733627 | 0.90[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3796940 | 0.86[AMR][1000 genomes] |
| rs3796941 | 0.86[AMR][1000 genomes] |
| rs3822286 | 0.90[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs4698757 | 0.82[AMR][1000 genomes] |
| rs4698804 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7668395 | 1.00[CEU][hapmap] |
| rs7691725 | 1.00[CEU][hapmap] |
| rs9307346 | 1.00[CEU][hapmap] |
| rs9990841 | 1.00[CEU][hapmap] |
| rs9994891 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869392 | chr4:110945459-111235071 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:110945400-110949000 | Enhancers | Brain Germinal Matrix | brain |
