Variant report

Variant	rs3796940
Chromosome Location	chr4:110930391-110930392
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11098059	0.84[AMR][1000 genomes]
rs11098062	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11569057	0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs11569093	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11569149	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506362	0.81[AMR][1000 genomes]
rs12507356	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12511518	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648439	0.89[AMR][1000 genomes]
rs2074391	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2237050	0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs3733627	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3796941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822286	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4698757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698804	1.00[ASN][1000 genomes]
rs721413	0.86[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110907000-110932400	Weak transcription	Psoas Muscle	Psoas
2	chr4:110910400-110935200	Weak transcription	Pancreas	Pancrea
3	chr4:110919000-110935200	Weak transcription	Left Ventricle	heart
4	chr4:110920800-110935800	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:110926800-110930400	Enhancers	Fetal Heart	heart
6	chr4:110926800-110931200	Enhancers	Liver	Liver
7	chr4:110927400-110931000	Strong transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:110928400-110931400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:110928400-110931400	Enhancers	Fetal Intestine Large	intestine
10	chr4:110930000-110930800	Weak transcription	Fetal Kidney	kidney
11	chr4:110930000-110937200	Weak transcription	Fetal Intestine Small	intestine
12	chr4:110930200-110932400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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