Variant report

Variant	rs11568969
Chromosome Location	chr4:110888629-110888630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110884465..110887295-chr4:110887593..110889209,2	K562	blood:
2	chr4:110887831..110890473-chr4:110895882..110898637,2	MCF-7	breast:
3	chr4:110884397..110887295-chr4:110887313..110889209,2	K562	blood:

Variant related genes	Relation type
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10003648	1.00[AMR][1000 genomes]
rs10028950	1.00[AMR][1000 genomes]
rs10029493	1.00[AMR][1000 genomes]
rs10029774	1.00[AMR][1000 genomes]
rs11568956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568977	1.00[AMR][1000 genomes]
rs11568979	1.00[AMR][1000 genomes]
rs11569009	1.00[AMR][1000 genomes]
rs11569099	1.00[AMR][1000 genomes]
rs17041111	1.00[AMR][1000 genomes]
rs17041117	1.00[AMR][1000 genomes]
rs17041119	1.00[AMR][1000 genomes]
rs28733095	1.00[AMR][1000 genomes]
rs57694253	1.00[AMR][1000 genomes]
rs58489427	1.00[AMR][1000 genomes]
rs6822980	1.00[AMR][1000 genomes]
rs6824759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110874400-110889000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
4	chr4:110884200-110893600	Weak transcription	Fetal Heart	heart
5	chr4:110885800-110897200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
7	chr4:110887800-110889800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:110888000-110889000	Enhancers	Duodenum Mucosa	Duodenum
9	chr4:110888000-110890400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:110888000-110891200	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:110888200-110888800	Enhancers	NHEK	skin
12	chr4:110888200-110889600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr4:110888200-110890600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:110888200-110890600	Enhancers	HMEC	breast
15	chr4:110888200-110891000	Enhancers	HUVEC	blood vessel
16	chr4:110888200-110893800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:110888400-110889200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:110888400-110889800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:110888600-110888800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr4:110888600-110889000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
21	chr4:110888600-110889800	Enhancers	NH-A	brain
22	chr4:110888600-110890800	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links