Variant report

Variant	rs11568976
Chromosome Location	chr4:110889709-110889710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr4:110889525-110889710	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110887831..110890473-chr4:110895882..110898637,2	MCF-7	breast:

Variant related genes	Relation type
EGF	TF binding region
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10003648	1.00[AMR][1000 genomes]
rs10028950	1.00[AMR][1000 genomes]
rs10029493	1.00[AMR][1000 genomes]
rs10029774	1.00[AMR][1000 genomes]
rs11568956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11568977	1.00[AMR][1000 genomes]
rs11568979	1.00[AMR][1000 genomes]
rs11569009	1.00[AMR][1000 genomes]
rs11569099	1.00[AMR][1000 genomes]
rs17041111	1.00[AMR][1000 genomes]
rs17041117	1.00[AMR][1000 genomes]
rs17041119	1.00[AMR][1000 genomes]
rs28733095	1.00[AMR][1000 genomes]
rs57694253	1.00[AMR][1000 genomes]
rs58489427	1.00[AMR][1000 genomes]
rs6822980	1.00[AMR][1000 genomes]
rs6824759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3384741	chr4:110889665-110889802	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
3	chr4:110884200-110893600	Weak transcription	Fetal Heart	heart
4	chr4:110885800-110897200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
6	chr4:110887800-110889800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:110888000-110890400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:110888000-110891200	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:110888200-110890600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:110888200-110890600	Enhancers	HMEC	breast
11	chr4:110888200-110891000	Enhancers	HUVEC	blood vessel
12	chr4:110888200-110893800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:110888400-110889800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:110888600-110889800	Enhancers	NH-A	brain
15	chr4:110888600-110890800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr4:110888800-110891200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:110889000-110890400	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr4:110889000-110890600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr4:110889000-110891000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:110889000-110891600	Enhancers	Primary B cells from peripheral blood	blood
21	chr4:110889000-110891800	Enhancers	Primary hematopoietic stem cells	blood
22	chr4:110889000-110894000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:110889400-110889800	Enhancers	Primary B cells from cord blood	blood
24	chr4:110889400-110891000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr4:110889400-110891800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr4:110889600-110889800	Enhancers	HSMM	muscle
27	chr4:110889600-110890200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:110889600-110890400	Enhancers	NHEK	skin
29	chr4:110889600-110890600	Enhancers	GM12878-XiMat	blood
30	chr4:110889600-110891000	Weak transcription	Placenta Amnion	Placenta Amnion

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