Variant report

Variant	rs6824759
Chromosome Location	chr4:110904490-110904491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:110899444..110901234-chr4:110903435..110906853,3	MCF-7	breast:
2	chr4:110899256..110901567-chr4:110902882..110905571,2	K562	blood:
3	chr4:110903447..110905388-chr4:110907522..110909225,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10003648	1.00[AMR][1000 genomes]
rs10028950	1.00[AMR][1000 genomes]
rs10029493	1.00[AMR][1000 genomes]
rs10029774	1.00[AMR][1000 genomes]
rs11568956	1.00[AMR][1000 genomes]
rs11568969	1.00[AMR][1000 genomes]
rs11568970	1.00[AMR][1000 genomes]
rs11568976	1.00[AMR][1000 genomes]
rs11568977	1.00[AMR][1000 genomes]
rs11568979	1.00[AMR][1000 genomes]
rs11569009	1.00[AMR][1000 genomes]
rs11569022	0.85[AFR][1000 genomes]
rs11569047	0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs11569099	1.00[AMR][1000 genomes]
rs17041111	1.00[AMR][1000 genomes]
rs17041117	1.00[AMR][1000 genomes]
rs17041119	1.00[AMR][1000 genomes]
rs28733095	1.00[AMR][1000 genomes]
rs57694253	1.00[AMR][1000 genomes]
rs58489427	1.00[AMR][1000 genomes]
rs6822980	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
3	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
4	chr4:110893800-110909600	Weak transcription	Fetal Heart	heart
5	chr4:110895000-110909600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:110898000-110906600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:110899400-110909800	Weak transcription	Right Atrium	heart
9	chr4:110900800-110905000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:110901000-110905200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:110901400-110920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:110901600-110904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:110902000-110906800	Weak transcription	NHDF-Ad	bronchial
15	chr4:110902000-110907200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:110902200-110906600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:110902200-110907600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:110902200-110910200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:110902400-110909400	Weak transcription	NHEK	skin
20	chr4:110902600-110906800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:110902600-110906800	Weak transcription	HSMM	muscle
22	chr4:110902600-110909600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:110902800-110910000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr4:110903200-110911400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:110904400-110906200	Weak transcription	HSMMtube	muscle

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