Variant report

Variant	rs58489427
Chromosome Location	chr4:110755113-110755114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10003648	1.00[AMR][1000 genomes]
rs10028950	1.00[AMR][1000 genomes]
rs10029493	1.00[AMR][1000 genomes]
rs10029774	1.00[AMR][1000 genomes]
rs11568956	1.00[AMR][1000 genomes]
rs11568969	1.00[AMR][1000 genomes]
rs11568970	1.00[AMR][1000 genomes]
rs11568976	1.00[AMR][1000 genomes]
rs11568977	1.00[AMR][1000 genomes]
rs11568979	1.00[AMR][1000 genomes]
rs11569009	1.00[AMR][1000 genomes]
rs11569099	1.00[AMR][1000 genomes]
rs17041111	1.00[AMR][1000 genomes]
rs17041117	1.00[AMR][1000 genomes]
rs17041119	1.00[AMR][1000 genomes]
rs28733095	1.00[AMR][1000 genomes]
rs5030676	1.00[AMR][1000 genomes]
rs57694253	1.00[AMR][1000 genomes]
rs6822980	1.00[AMR][1000 genomes]
rs6824759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110737600-110770600	Weak transcription	Aorta	Aorta
2	chr4:110738000-110760800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:110738400-110757200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:110742200-110764400	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:110744000-110759600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:110744400-110774400	Weak transcription	Psoas Muscle	Psoas
7	chr4:110744600-110773200	Weak transcription	Primary T cells from cord blood	blood
8	chr4:110746400-110764000	Weak transcription	Primary B cells from cord blood	blood
9	chr4:110746600-110761200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:110746800-110759400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:110746800-110767600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:110747000-110757600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:110747200-110756400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:110747600-110758400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr4:110749600-110757600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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