Variant report

Variant	rs11577069
Chromosome Location	chr1:176283381-176283382
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11583207	0.84[EUR][1000 genomes]
rs11583765	0.94[EUR][1000 genomes]
rs11583991	0.84[EUR][1000 genomes]
rs11586568	0.84[EUR][1000 genomes]
rs11587051	0.89[EUR][1000 genomes]
rs11587254	0.81[EUR][1000 genomes]
rs11588361	0.89[EUR][1000 genomes]
rs56125427	0.84[EUR][1000 genomes]
rs56192244	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176283000-176283400	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr1:176283000-176283400	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr1:176283000-176283600	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr1:176283000-176283800	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr1:176283000-176284000	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr1:176283200-176283600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:176283200-176283800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr1:176283200-176284000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr1:176283200-176284000	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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