Variant report

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11577069	0.84[EUR][1000 genomes]
rs11579181	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs11579291	0.94[EUR][1000 genomes]
rs11583765	0.89[EUR][1000 genomes]
rs11583991	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11586568	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11587051	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11587254	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11587785	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11588361	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11588480	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs56125427	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56192244	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56943475	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs704833	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
3	chr1:176193600-176195000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:176193600-176195200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:176193600-176195200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:176193600-176195200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:176193800-176195200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:176193800-176195200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:176193800-176195400	Enhancers	Duodenum Mucosa	Duodenum
10	chr1:176194000-176195000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:176194000-176197600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:176194200-176195200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:176194400-176195200	Enhancers	Fetal Intestine Large	intestine
14	chr1:176194600-176195000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:176194600-176195000	Enhancers	HepG2	liver
16	chr1:176194600-176196400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:176194800-176195200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr1:176194800-176195200	Enhancers	Fetal Intestine Small	intestine
19	chr1:176194800-176195400	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr1:176194800-176195600	Enhancers	Fetal Muscle Leg	muscle

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