Variant report

Variant	rs704833
Chromosome Location	chr1:176186059-176186060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:176176870..176178715-chr1:176185078..176187298,2	MCF-7	breast:
2	chr1:176175244..176178958-chr1:176179061..176187498,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236021	Chromatin interaction
ENSG00000143207	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10429846	1.00[ASN][1000 genomes]
rs10913125	1.00[ASN][1000 genomes]
rs11579181	0.85[TSI][hapmap]
rs11587254	0.85[TSI][hapmap]
rs11587785	0.85[TSI][hapmap]
rs2481626	1.00[ASN][1000 genomes]
rs2481629	1.00[ASN][1000 genomes]
rs2481632	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2481637	1.00[ASN][1000 genomes]
rs2481640	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2481648	1.00[CHB][hapmap]
rs2481649	1.00[ASN][1000 genomes]
rs2481652	1.00[ASN][1000 genomes]
rs2502821	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2502827	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2502828	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2502833	1.00[ASN][1000 genomes]
rs2502837	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2774925	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4233165	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4298689	1.00[ASN][1000 genomes]
rs4460596	1.00[CHB][hapmap]
rs4652146	1.00[ASN][1000 genomes]
rs533299	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs537407	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs598855	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs613965	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs61821055	1.00[ASN][1000 genomes]
rs6425372	1.00[ASN][1000 genomes]
rs6425373	1.00[ASN][1000 genomes]
rs6425374	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs646754	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs704828	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73042663	1.00[ASN][1000 genomes]
rs7532122	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7541563	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7554913	1.00[CHB][hapmap]
rs791748	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs998631	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176178200-176189400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:176178200-176193800	Weak transcription	Pancreas	Pancrea
4	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain

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