The 2.0 version of rSNPBase

Variant report

Variant rs2502828
Chromosome Location chr1:176050138-176050139
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175978200-176050600 Weak transcription Aorta Aorta
2 chr1:175978400-176069000 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr1:175994200-176065200 Weak transcription Psoas Muscle Psoas
4 chr1:176007800-176066400 Weak transcription Fetal Brain Male brain
5 chr1:176010400-176066000 Weak transcription Muscle Satellite Cultured Cells --
6 chr1:176012400-176062800 Weak transcription Lung lung
7 chr1:176012400-176065800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr1:176028200-176079200 Weak transcription HSMMtube muscle
9 chr1:176031000-176054000 Weak transcription NH-A brain
10 chr1:176035000-176069800 Weak transcription NHEK skin
11 chr1:176035200-176067600 Weak transcription Colonic Mucosa Colon
12 chr1:176035400-176066400 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr1:176035400-176067200 Weak transcription HUVEC blood vessel
14 chr1:176036000-176053800 Weak transcription Placenta Placenta
15 chr1:176037200-176064600 Weak transcription Gastric stomach
16 chr1:176037200-176067200 Weak transcription Small Intestine intestine
17 chr1:176037200-176067400 Weak transcription Osteobl bone
18 chr1:176038600-176068800 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr1:176038800-176051800 Weak transcription Rectal Smooth Muscle rectum
20 chr1:176038800-176059400 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr1:176039200-176068800 Weak transcription HMEC breast
22 chr1:176039400-176058800 Weak transcription iPS-20b Cell Line embryonic stem cell
23 chr1:176040600-176065400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:176042200-176056600 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr1:176042800-176067200 Weak transcription iPS-18 Cell Line embryonic stem cell
26 chr1:176043000-176065400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:176043200-176052200 Strong transcription Primary monocytes fromperipheralblood blood
28 chr1:176043400-176051200 Weak transcription Brain Angular Gyrus brain
29 chr1:176044400-176050600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:176044600-176050400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
31 chr1:176045000-176050400 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
32 chr1:176045000-176050400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:176045200-176050200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:176045200-176050200 ZNF genes & repeats Primary T cells from cord blood blood
35 chr1:176045200-176064600 Weak transcription Fetal Stomach stomach
36 chr1:176045800-176050400 Strong transcription Duodenum Mucosa Duodenum
37 chr1:176045800-176066000 Weak transcription Colon Smooth Muscle Colon
38 chr1:176046200-176051600 Weak transcription Brain Hippocampus Middle brain
39 chr1:176046400-176051600 Strong transcription Dnd41 blood
40 chr1:176046400-176055000 Weak transcription Brain Inferior Temporal Lobe brain
41 chr1:176046400-176055400 Strong transcription Monocytes-CD14+_RO01746 blood
42 chr1:176046600-176050400 Strong transcription Primary hematopoietic stem cells short term culture blood
43 chr1:176046600-176057000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr1:176046600-176082200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
45 chr1:176046800-176050400 Strong transcription Primary T cells fromperipheralblood blood
46 chr1:176046800-176055200 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr1:176047000-176050400 Strong transcription Primary T helper cells PMA-I stimulated --
48 chr1:176047000-176051400 Strong transcription Primary T helper naive cells fromperipheralblood blood
49 chr1:176047200-176050200 Strong transcription Primary B cells from peripheral blood blood
50 chr1:176047200-176050400 Strong transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015