The 2.0 version of rSNPBase

Variant report

Variant rs4534339
Chromosome Location chr1:175937540-175937541
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175874400-175945600 Weak transcription A549 lung
2 chr1:175880000-175937800 Weak transcription HSMMtube muscle
3 chr1:175889200-175937800 Weak transcription Osteobl bone
4 chr1:175892400-175940600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:175893200-175943000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:175897000-175953000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:175897600-175953200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:175897800-175952400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:175898600-175953200 Weak transcription Pancreas Pancrea
10 chr1:175899200-175953200 Weak transcription Esophagus oesophagus
11 chr1:175901600-175940600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:175903400-175951400 Weak transcription K562 blood
13 chr1:175903600-175940800 Weak transcription HMEC breast
14 chr1:175904200-175956200 Weak transcription Psoas Muscle Psoas
15 chr1:175904600-175953000 Weak transcription Right Ventricle heart
16 chr1:175905000-175946800 Strong transcription Monocytes-CD14+_RO01746 blood
17 chr1:175906400-175940600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr1:175906400-175944800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:175906400-175952400 Weak transcription Spleen Spleen
20 chr1:175906400-175962600 Weak transcription NH-A brain
21 chr1:175906800-175952000 Weak transcription Stomach Smooth Muscle stomach
22 chr1:175907400-175950600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr1:175907800-175940600 Weak transcription Colonic Mucosa Colon
24 chr1:175907800-175945400 Weak transcription Small Intestine intestine
25 chr1:175907800-175945600 Weak transcription Muscle Satellite Cultured Cells --
26 chr1:175908000-175959400 Weak transcription NHEK skin
27 chr1:175908200-175939400 Weak transcription Brain Cingulate Gyrus brain
28 chr1:175909400-175948000 Weak transcription Colon Smooth Muscle Colon
29 chr1:175909600-175942800 Weak transcription Fetal Brain Female brain
30 chr1:175911200-175947600 Weak transcription Brain Hippocampus Middle brain
31 chr1:175911200-175950400 Weak transcription Fetal Heart heart
32 chr1:175916000-175940600 Weak transcription Hela-S3 cervix
33 chr1:175916200-175939800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:175916400-175937600 Weak transcription HUES64 Cell Line embryonic stem cell
35 chr1:175916400-175939200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:175916400-175939200 Weak transcription HSMM muscle
37 chr1:175916400-175940600 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr1:175916400-175952200 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr1:175917600-175940000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr1:175917600-175953000 Weak transcription Primary T killer memory cells from peripheral blood blood
41 chr1:175919000-175947800 Weak transcription Brain Germinal Matrix brain
42 chr1:175921400-175937800 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr1:175921400-175951200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr1:175922000-175938000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr1:175922000-175940600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:175922000-175952000 Weak transcription Primary T helper naive cells from peripheral blood blood
47 chr1:175922800-175940600 Weak transcription Fetal Muscle Leg muscle
48 chr1:175924600-175938200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:175924600-175953200 Weak transcription Gastric stomach
50 chr1:175924600-175953200 Weak transcription HepG2 liver

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Last update: Aug 31, 2015