Variant report

Variant	rs11586568
Chromosome Location	chr1:176198599-176198600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11577069	0.84[EUR][1000 genomes]
rs11579181	0.86[EUR][1000 genomes]
rs11579291	0.94[EUR][1000 genomes]
rs11583071	0.81[AMR][1000 genomes]
rs11583207	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11583765	0.89[EUR][1000 genomes]
rs11583991	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11587051	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11587254	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11587785	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11588361	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11588480	0.92[EUR][1000 genomes]
rs56125427	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56192244	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56943475	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
3	chr1:176197000-176201800	Weak transcription	Brain Substantia Nigra	brain
4	chr1:176197200-176199000	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:176197600-176199600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:176198400-176198600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:176198400-176198600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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