Variant report

Variant	rs11588361
Chromosome Location	chr1:176216144-176216145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11577069	0.89[EUR][1000 genomes]
rs11579181	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11579291	0.89[EUR][1000 genomes]
rs11583207	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11583765	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11583991	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11586568	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11587051	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11587254	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11587785	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11588480	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56125427	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56192244	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56943475	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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