Variant report

Variant	rs1158307
Chromosome Location	chr3:68571318-68571319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1039971	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1039972	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1039974	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1158308	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13061250	1.00[JPT][hapmap]
rs13065724	1.00[JPT][hapmap]
rs13068116	0.84[AMR][1000 genomes]
rs13080569	0.88[AMR][1000 genomes]
rs13080937	0.88[AMR][1000 genomes]
rs13082033	1.00[JPT][hapmap]
rs13095473	0.88[AMR][1000 genomes]
rs13096988	0.88[AMR][1000 genomes]
rs1355522	1.00[JPT][hapmap]
rs1355525	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1355527	1.00[JPT][hapmap]
rs1355528	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1398066	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1398068	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1398070	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1511889	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1511890	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1511893	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511894	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511895	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511896	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511898	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1511899	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1511900	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1511901	0.88[EUR][1000 genomes]
rs1511902	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511903	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511904	1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1511908	1.00[JPT][hapmap]
rs1533155	1.00[JPT][hapmap]
rs1533156	1.00[JPT][hapmap]
rs1606243	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17183422	1.00[JPT][hapmap]
rs17242840	0.84[AMR][1000 genomes]
rs17243078	1.00[JPT][hapmap]
rs17243134	1.00[JPT][hapmap]
rs1849228	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1849229	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1849230	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1849231	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1849232	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1849234	1.00[JPT][hapmap]
rs1849235	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1849236	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1858375	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1858376	1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1858377	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1877348	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1912851	1.00[JPT][hapmap]
rs1912852	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1912853	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1912854	1.00[JPT][hapmap]
rs1912855	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2015578	1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2137180	1.00[JPT][hapmap]
rs2137181	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2665530	1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2665531	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2665532	1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2665533	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2665535	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2665536	1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2665537	1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2665538	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2665539	1.00[JPT][hapmap]
rs2665540	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2665541	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2665551	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2668156	1.00[JPT][hapmap]
rs2668158	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2668159	1.00[JPT][hapmap]
rs2668161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2668162	1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2668163	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2668165	1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2668166	1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2668167	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2668168	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2668169	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2668170	1.00[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2668172	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs4260447	1.00[JPT][hapmap]
rs4855339	1.00[JPT][hapmap]
rs58726756	0.84[AMR][1000 genomes]
rs6549128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs6549130	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs6774423	1.00[JPT][hapmap]
rs6774723	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs7619368	1.00[JPT][hapmap]
rs7653709	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9310104	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs9310105	1.00[JPT][hapmap]
rs9647394	1.00[JPT][hapmap]
rs9810667	1.00[JPT][hapmap]
rs9819205	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs983191	1.00[JPT][hapmap]
rs9836279	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs9856419	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links