The 2.0 version of rSNPBase

Variant report

Variant rs11586604
Chromosome Location chr1:227183865-227183866
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227163400-227191200 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr1:227175200-227198400 Weak transcription A549 lung
4 chr1:227175200-227210200 Weak transcription HMEC breast
5 chr1:227175600-227216200 Weak transcription H9 Cell Line embryonic stem cell
6 chr1:227176000-227190200 Weak transcription Esophagus oesophagus
7 chr1:227176000-227191800 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:227176000-227216400 Weak transcription NHLF lung
9 chr1:227176400-227190400 Weak transcription Osteobl bone
10 chr1:227176600-227190000 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr1:227177200-227188600 Weak transcription Fetal Lung lung
12 chr1:227177400-227255200 Weak transcription Small Intestine intestine
13 chr1:227178200-227188600 Weak transcription HSMMtube muscle
14 chr1:227178400-227190400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr1:227178400-227271200 Weak transcription Psoas Muscle Psoas
16 chr1:227178600-227206600 Weak transcription Primary hematopoietic stem cells blood
17 chr1:227178600-227226200 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr1:227178800-227188800 Weak transcription Muscle Satellite Cultured Cells --
19 chr1:227179000-227188400 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:227179400-227188200 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:227179400-227198400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr1:227179400-227204400 Weak transcription Stomach Mucosa stomach
23 chr1:227179400-227215000 Weak transcription Placenta Placenta
24 chr1:227179600-227213800 Weak transcription NH-A brain
25 chr1:227180200-227184200 Strong transcription Breast Myoepithelial Primary Cells Breast
26 chr1:227180400-227184600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr1:227180800-227187800 Weak transcription HSMM muscle
28 chr1:227180800-227190200 Weak transcription K562 blood
29 chr1:227181200-227190400 Weak transcription Rectal Smooth Muscle rectum
30 chr1:227181400-227184000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr1:227181600-227184000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
32 chr1:227181600-227184000 Enhancers Brain Substantia Nigra brain
33 chr1:227181600-227184200 Enhancers HUES48 Cell Line embryonic stem cell
34 chr1:227181600-227191200 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:227181800-227184000 Enhancers H1 Cell Line embryonic stem cell
36 chr1:227181800-227184000 Enhancers Brain Hippocampus Middle brain
37 chr1:227181800-227184000 Enhancers Fetal Heart heart
38 chr1:227181800-227184200 Enhancers iPS-18 Cell Line embryonic stem cell
39 chr1:227181800-227188000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr1:227181800-227188200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr1:227181800-227188600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:227182000-227188200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:227182000-227190200 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr1:227182000-227216000 Weak transcription Colon Smooth Muscle Colon
45 chr1:227182200-227190200 Weak transcription Ovary ovary
46 chr1:227182200-227205600 Weak transcription Fetal Brain Male brain
47 chr1:227182400-227184000 Enhancers HUES64 Cell Line embryonic stem cell
48 chr1:227182400-227190800 Weak transcription NHEK skin
49 chr1:227182600-227184200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr1:227182600-227187800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015