The 2.0 version of rSNPBase

Variant report

Variant rs1343744
Chromosome Location chr1:227183022-227183023
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227163400-227191200 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr1:227173400-227183400 Strong transcription Cortex derived primary cultured neurospheres brain
4 chr1:227175200-227198400 Weak transcription A549 lung
5 chr1:227175200-227210200 Weak transcription HMEC breast
6 chr1:227175600-227183200 Weak transcription iPS-20b Cell Line embryonic stem cell
7 chr1:227175600-227216200 Weak transcription H9 Cell Line embryonic stem cell
8 chr1:227176000-227190200 Weak transcription Esophagus oesophagus
9 chr1:227176000-227191800 Weak transcription Placenta Amnion Placenta Amnion
10 chr1:227176000-227216400 Weak transcription NHLF lung
11 chr1:227176400-227190400 Weak transcription Osteobl bone
12 chr1:227176600-227190000 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr1:227177200-227188600 Weak transcription Fetal Lung lung
14 chr1:227177400-227255200 Weak transcription Small Intestine intestine
15 chr1:227178000-227183200 Strong transcription Fetal Stomach stomach
16 chr1:227178200-227188600 Weak transcription HSMMtube muscle
17 chr1:227178400-227190400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr1:227178400-227271200 Weak transcription Psoas Muscle Psoas
19 chr1:227178600-227206600 Weak transcription Primary hematopoietic stem cells blood
20 chr1:227178600-227226200 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr1:227178800-227188800 Weak transcription Muscle Satellite Cultured Cells --
22 chr1:227179000-227188400 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr1:227179400-227183200 Strong transcription Fetal Adrenal Gland Adrenal Gland
24 chr1:227179400-227188200 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:227179400-227198400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:227179400-227204400 Weak transcription Stomach Mucosa stomach
27 chr1:227179400-227215000 Weak transcription Placenta Placenta
28 chr1:227179600-227213800 Weak transcription NH-A brain
29 chr1:227180000-227183200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr1:227180200-227183200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr1:227180200-227184200 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr1:227180400-227184600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr1:227180600-227183200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
34 chr1:227180600-227183200 Strong transcription Pancreas Pancrea
35 chr1:227180800-227183200 Strong transcription Duodenum Mucosa Duodenum
36 chr1:227180800-227187800 Weak transcription HSMM muscle
37 chr1:227180800-227190200 Weak transcription K562 blood
38 chr1:227181200-227190400 Weak transcription Rectal Smooth Muscle rectum
39 chr1:227181400-227184000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr1:227181600-227183200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:227181600-227183400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:227181600-227184000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
43 chr1:227181600-227184000 Enhancers Brain Substantia Nigra brain
44 chr1:227181600-227184200 Enhancers HUES48 Cell Line embryonic stem cell
45 chr1:227181600-227191200 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr1:227181800-227183200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr1:227181800-227183200 Enhancers Brain Angular Gyrus brain
48 chr1:227181800-227183200 Strong transcription Colonic Mucosa Colon
49 chr1:227181800-227183200 Enhancers Right Atrium heart
50 chr1:227181800-227183400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell

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Last update: Aug 31, 2015