The 2.0 version of rSNPBase

Variant report

Variant rs7549586
Chromosome Location chr1:227214566-227214567
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227175600-227216200 Weak transcription H9 Cell Line embryonic stem cell
3 chr1:227176000-227216400 Weak transcription NHLF lung
4 chr1:227177400-227255200 Weak transcription Small Intestine intestine
5 chr1:227178400-227271200 Weak transcription Psoas Muscle Psoas
6 chr1:227178600-227226200 Weak transcription Primary hematopoietic stem cells short term culture blood
7 chr1:227179400-227215000 Weak transcription Placenta Placenta
8 chr1:227182000-227216000 Weak transcription Colon Smooth Muscle Colon
9 chr1:227182800-227224200 Weak transcription Spleen Spleen
10 chr1:227183200-227228200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr1:227183200-227240400 Weak transcription Colonic Mucosa Colon
12 chr1:227184000-227214600 Weak transcription H1 Cell Line embryonic stem cell
13 chr1:227184000-227234000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:227187200-227218600 Weak transcription ES-WA7 Cell Line embryonic stem cell
15 chr1:227190600-227217000 Weak transcription Esophagus oesophagus
16 chr1:227190600-227223200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:227190600-227272600 Weak transcription Lung lung
18 chr1:227192600-227220200 Weak transcription Rectal Smooth Muscle rectum
19 chr1:227192800-227220200 Weak transcription Gastric stomach
20 chr1:227202600-227217200 Strong transcription Adipose Nuclei Adipose
21 chr1:227202600-227222600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:227203000-227278800 Weak transcription Pancreas Pancrea
23 chr1:227205400-227216400 Weak transcription HepG2 liver
24 chr1:227205600-227220400 Weak transcription Stomach Mucosa stomach
25 chr1:227207600-227242000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr1:227208200-227216200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr1:227208600-227216200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:227208800-227216200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr1:227208800-227222600 Strong transcription Cortex derived primary cultured neurospheres brain
30 chr1:227209000-227215400 Weak transcription Muscle Satellite Cultured Cells --
31 chr1:227209000-227215800 Weak transcription iPS-18 Cell Line embryonic stem cell
32 chr1:227209000-227216200 Weak transcription HSMM muscle
33 chr1:227209000-227231000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:227209000-227234600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr1:227209000-227272400 Weak transcription Fetal Intestine Small intestine
36 chr1:227209200-227215000 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr1:227209200-227215200 Weak transcription Fetal Brain Female brain
38 chr1:227209200-227216400 Weak transcription Primary hematopoietic stem cells blood
39 chr1:227209200-227301600 Weak transcription Placenta Amnion Placenta Amnion
40 chr1:227209400-227215000 Weak transcription Fetal Brain Male brain
41 chr1:227209400-227215800 Weak transcription HSMMtube muscle
42 chr1:227209800-227222800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:227210200-227226400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:227210600-227214600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr1:227210600-227215600 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr1:227210600-227215600 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr1:227210600-227245800 Weak transcription NHEK skin
48 chr1:227210800-227215000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr1:227210800-227215400 Weak transcription HMEC breast
50 chr1:227210800-227216400 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015