Variant report

Variant	rs11586933
Chromosome Location	chr1:76587273-76587274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11162082	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583963	0.96[EUR][1000 genomes]
rs11584597	0.98[EUR][1000 genomes]
rs11587725	0.96[EUR][1000 genomes]
rs11590555	0.99[EUR][1000 genomes]
rs12091356	0.83[EUR][1000 genomes]
rs12407026	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407031	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407845	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12408886	0.95[ASN][1000 genomes]
rs12408918	0.95[ASN][1000 genomes]
rs1684948	0.86[EUR][1000 genomes]
rs17098119	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609927	0.99[EUR][1000 genomes]
rs17610084	0.99[EUR][1000 genomes]
rs17610851	0.86[EUR][1000 genomes]
rs17662194	0.86[EUR][1000 genomes]
rs2631779	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2783661	0.95[ASN][1000 genomes]
rs289687	0.84[ASN][1000 genomes]
rs36050099	0.89[EUR][1000 genomes]
rs57217665	0.95[ASN][1000 genomes]
rs61771334	0.89[EUR][1000 genomes]
rs61771335	0.83[EUR][1000 genomes]
rs6657466	0.95[ASN][1000 genomes]
rs6657828	0.95[ASN][1000 genomes]
rs6664446	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673424	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6691344	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv522056	chr1:76573614-76598209	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76557400-76605800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:76557600-76588800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:76575400-76606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:76576400-76591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
6	chr1:76577000-76590800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:76579400-76590800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:76579800-76590800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:76581800-76596200	Weak transcription	Fetal Intestine Large	intestine
10	chr1:76583400-76590200	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:76583600-76589800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:76585800-76588600	Enhancers	Fetal Heart	heart
13	chr1:76586000-76588000	Weak transcription	Psoas Muscle	Psoas
14	chr1:76586200-76587800	Enhancers	Right Atrium	heart
15	chr1:76586400-76588400	Enhancers	Fetal Lung	lung
16	chr1:76586400-76590000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:76586800-76588000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:76587000-76588200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:76587000-76588200	Enhancers	Left Ventricle	heart
20	chr1:76587000-76588400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr1:76587000-76588600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr1:76587000-76590200	Enhancers	Lung	lung
23	chr1:76587200-76590800	Weak transcription	Brain Anterior Caudate	brain

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