Variant report

Variant	rs17662194
Chromosome Location	chr1:76601670-76601671
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10518526	1.00[ASN][1000 genomes]
rs11162082	0.83[EUR][1000 genomes]
rs11162089	1.00[ASN][1000 genomes]
rs11162098	1.00[ASN][1000 genomes]
rs11162099	1.00[ASN][1000 genomes]
rs1146657	1.00[ASN][1000 genomes]
rs1146659	1.00[ASN][1000 genomes]
rs11577339	1.00[ASN][1000 genomes]
rs11583963	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584597	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586810	0.90[CEU][hapmap]
rs11586933	0.86[EUR][1000 genomes]
rs11587725	0.83[CEU][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11590555	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12091356	0.88[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12095328	1.00[ASN][1000 genomes]
rs12122853	1.00[ASN][1000 genomes]
rs12407026	0.82[EUR][1000 genomes]
rs12407031	0.84[EUR][1000 genomes]
rs12407845	0.83[EUR][1000 genomes]
rs1251466	1.00[ASN][1000 genomes]
rs1251468	1.00[ASN][1000 genomes]
rs1251469	1.00[ASN][1000 genomes]
rs1684948	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098119	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs17609927	0.80[CEU][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610084	0.90[CEU][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610851	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17626151	1.00[ASN][1000 genomes]
rs17660872	1.00[ASN][1000 genomes]
rs2631779	0.85[EUR][1000 genomes]
rs36050099	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs434302	1.00[ASN][1000 genomes]
rs481510	1.00[ASN][1000 genomes]
rs518915	1.00[ASN][1000 genomes]
rs522414	1.00[ASN][1000 genomes]
rs538977	1.00[ASN][1000 genomes]
rs541675	1.00[ASN][1000 genomes]
rs549014	1.00[ASN][1000 genomes]
rs61771334	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61771335	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61771336	1.00[ASN][1000 genomes]
rs61771337	1.00[ASN][1000 genomes]
rs61773761	1.00[ASN][1000 genomes]
rs61773762	1.00[ASN][1000 genomes]
rs61773763	1.00[ASN][1000 genomes]
rs61773764	1.00[ASN][1000 genomes]
rs61773765	1.00[ASN][1000 genomes]
rs6664446	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6667200	1.00[ASN][1000 genomes]
rs6673424	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6691344	0.81[EUR][1000 genomes]
rs72690235	1.00[ASN][1000 genomes]
rs923246	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv947432	chr1:76591253-76601907	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76557400-76605800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:76575400-76606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:76587800-76602800	Weak transcription	Right Atrium	heart
5	chr1:76588200-76615600	Weak transcription	Left Ventricle	heart
6	chr1:76591200-76607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:76592600-76610800	Weak transcription	Fetal Kidney	kidney
8	chr1:76592800-76605800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:76593000-76608200	Weak transcription	Fetal Lung	lung
10	chr1:76594200-76607400	Weak transcription	Fetal Brain Female	brain
11	chr1:76594600-76615400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:76595600-76602400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:76598600-76609800	Weak transcription	Fetal Stomach	stomach
14	chr1:76599800-76620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:76601200-76603000	Enhancers	Brain Angular Gyrus	brain
16	chr1:76601200-76603000	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:76601200-76603400	Weak transcription	Psoas Muscle	Psoas
18	chr1:76601200-76604600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:76601400-76601800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr1:76601400-76601800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:76601400-76601800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr1:76601400-76602000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:76601400-76603800	Enhancers	Brain Anterior Caudate	brain
24	chr1:76601400-76604000	Enhancers	Brain Substantia Nigra	brain
25	chr1:76601600-76603600	Enhancers	Brain Hippocampus Middle	brain
26	chr1:76601600-76605200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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