Variant report
| Variant | rs72690235 |
|---|---|
| Chromosome Location | chr1:76450969-76450970 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10518526 | 1.00[ASN][1000 genomes] |
| rs11162089 | 1.00[ASN][1000 genomes] |
| rs11162098 | 1.00[ASN][1000 genomes] |
| rs11162099 | 1.00[ASN][1000 genomes] |
| rs1146657 | 1.00[ASN][1000 genomes] |
| rs1146659 | 1.00[ASN][1000 genomes] |
| rs11577339 | 1.00[ASN][1000 genomes] |
| rs11583963 | 1.00[ASN][1000 genomes] |
| rs11584597 | 1.00[ASN][1000 genomes] |
| rs11587725 | 1.00[ASN][1000 genomes] |
| rs11590555 | 1.00[ASN][1000 genomes] |
| rs12091356 | 1.00[ASN][1000 genomes] |
| rs12095328 | 1.00[ASN][1000 genomes] |
| rs12122853 | 1.00[ASN][1000 genomes] |
| rs1251466 | 1.00[ASN][1000 genomes] |
| rs1251468 | 1.00[ASN][1000 genomes] |
| rs1251469 | 1.00[ASN][1000 genomes] |
| rs1684948 | 1.00[ASN][1000 genomes] |
| rs17609927 | 1.00[ASN][1000 genomes] |
| rs17610084 | 1.00[ASN][1000 genomes] |
| rs17610851 | 1.00[ASN][1000 genomes] |
| rs17660872 | 1.00[ASN][1000 genomes] |
| rs17662194 | 1.00[ASN][1000 genomes] |
| rs36050099 | 1.00[ASN][1000 genomes] |
| rs434302 | 1.00[ASN][1000 genomes] |
| rs518915 | 1.00[ASN][1000 genomes] |
| rs5745437 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61771334 | 1.00[ASN][1000 genomes] |
| rs61771335 | 1.00[ASN][1000 genomes] |
| rs61771336 | 1.00[ASN][1000 genomes] |
| rs61771337 | 1.00[ASN][1000 genomes] |
| rs61773761 | 1.00[ASN][1000 genomes] |
| rs61773762 | 1.00[ASN][1000 genomes] |
| rs61773763 | 1.00[ASN][1000 genomes] |
| rs61773764 | 1.00[ASN][1000 genomes] |
| rs61773765 | 1.00[ASN][1000 genomes] |
| rs6667200 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014072 | chr1:76200531-76460726 | Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv535005 | chr1:76200531-76460726 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 3 | nsv998499 | chr1:76361784-76598712 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:76450800-76451400 | Enhancers | GM12878-XiMat | blood |
