Variant report

Variant	rs17610851
Chromosome Location	chr1:76605744-76605745
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76456932..76457512-chr1:76605708..76606546,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10518526	1.00[ASN][1000 genomes]
rs11162082	0.83[EUR][1000 genomes]
rs11162089	1.00[ASN][1000 genomes]
rs11162098	1.00[ASN][1000 genomes]
rs11162099	1.00[ASN][1000 genomes]
rs1146657	1.00[ASN][1000 genomes]
rs1146659	1.00[ASN][1000 genomes]
rs11577339	1.00[ASN][1000 genomes]
rs11583963	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584597	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586810	0.90[CEU][hapmap]
rs11586933	0.86[EUR][1000 genomes]
rs11587725	0.83[CEU][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11590555	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12091356	0.88[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12095328	1.00[ASN][1000 genomes]
rs12122853	1.00[ASN][1000 genomes]
rs12407026	0.82[EUR][1000 genomes]
rs12407031	0.84[EUR][1000 genomes]
rs12407845	0.83[EUR][1000 genomes]
rs1251466	1.00[ASN][1000 genomes]
rs1251468	1.00[ASN][1000 genomes]
rs1251469	1.00[ASN][1000 genomes]
rs1684948	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098119	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs17609927	0.80[CEU][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610084	0.90[CEU][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17626151	1.00[ASN][1000 genomes]
rs17660872	1.00[ASN][1000 genomes]
rs17662194	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2631779	0.85[EUR][1000 genomes]
rs36050099	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs434302	1.00[ASN][1000 genomes]
rs481510	1.00[ASN][1000 genomes]
rs518915	1.00[ASN][1000 genomes]
rs522414	1.00[ASN][1000 genomes]
rs538977	1.00[ASN][1000 genomes]
rs541675	1.00[ASN][1000 genomes]
rs549014	1.00[ASN][1000 genomes]
rs61771334	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61771335	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61771336	1.00[ASN][1000 genomes]
rs61771337	1.00[ASN][1000 genomes]
rs61773761	1.00[ASN][1000 genomes]
rs61773762	1.00[ASN][1000 genomes]
rs61773763	1.00[ASN][1000 genomes]
rs61773764	1.00[ASN][1000 genomes]
rs61773765	1.00[ASN][1000 genomes]
rs6664446	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6667200	1.00[ASN][1000 genomes]
rs6673424	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs6691344	0.81[EUR][1000 genomes]
rs72690235	1.00[ASN][1000 genomes]
rs923246	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76557400-76605800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:76575400-76606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:76588200-76615600	Weak transcription	Left Ventricle	heart
5	chr1:76591200-76607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:76592600-76610800	Weak transcription	Fetal Kidney	kidney
7	chr1:76592800-76605800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:76593000-76608200	Weak transcription	Fetal Lung	lung
9	chr1:76594200-76607400	Weak transcription	Fetal Brain Female	brain
10	chr1:76594600-76615400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:76598600-76609800	Weak transcription	Fetal Stomach	stomach
12	chr1:76599800-76620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:76601800-76606000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:76601800-76608200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:76602000-76607600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:76603600-76608000	Weak transcription	Right Atrium	heart
17	chr1:76604400-76605800	Weak transcription	HUVEC	blood vessel
18	chr1:76604400-76606000	Weak transcription	Stomach Mucosa	stomach
19	chr1:76604600-76606000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:76604600-76608200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:76604800-76609200	Enhancers	Brain Hippocampus Middle	brain
22	chr1:76605000-76606200	Enhancers	Brain Anterior Caudate	brain
23	chr1:76605000-76608800	Enhancers	Brain Substantia Nigra	brain
24	chr1:76605200-76606000	Enhancers	Brain Cingulate Gyrus	brain
25	chr1:76605200-76606000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:76605400-76607800	Enhancers	Adipose Nuclei	Adipose
27	chr1:76605600-76606200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr1:76605600-76606200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:76605600-76606200	Enhancers	Brain Angular Gyrus	brain
30	chr1:76605600-76606200	Enhancers	Fetal Brain Male	brain
31	chr1:76605600-76606200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr1:76605600-76606200	Enhancers	Spleen	Spleen
33	chr1:76605600-76606400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr1:76605600-76606400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr1:76605600-76606600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:76605600-76606800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr1:76605600-76607200	Enhancers	Small Intestine	intestine
38	chr1:76605600-76608200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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