Variant report
Variant | rs11587269 |
---|---|
Chromosome Location | chr1:152891805-152891806 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000169469 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10494282 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10888529 | 0.84[CEU][hapmap] |
rs1108410 | 0.81[CEU][hapmap];0.88[CHB][hapmap] |
rs11205182 | 0.81[CEU][hapmap] |
rs11488175 | 0.84[CEU][hapmap];0.89[CHB][hapmap] |
rs11576457 | 0.99[ASN][1000 genomes] |
rs11576797 | 0.84[CEU][hapmap] |
rs11576882 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11577384 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11578914 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11581802 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11588463 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11590369 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11590835 | 0.81[CEU][hapmap] |
rs11812015 | 0.81[CEU][hapmap] |
rs12041126 | 0.87[EUR][1000 genomes] |
rs12079087 | 0.81[CEU][hapmap] |
rs12083211 | 0.84[CEU][hapmap] |
rs12734348 | 0.89[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes] |
rs1415972 | 0.92[CEU][hapmap] |
rs1500937 | 0.81[CEU][hapmap] |
rs17627288 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1995308 | 0.80[CEU][hapmap] |
rs2050673 | 0.92[CEU][hapmap];0.91[EUR][1000 genomes] |
rs2068678 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2339386 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs28462230 | 0.90[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs28608883 | 0.90[ASN][1000 genomes] |
rs28924721 | 0.92[CEU][hapmap] |
rs4620471 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs55959888 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs56241316 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs56335979 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs58124215 | 0.99[ASN][1000 genomes] |
rs58298199 | 0.95[EUR][1000 genomes] |
rs61815707 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs61815711 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs61815713 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs61815714 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs61815715 | 0.90[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs6587724 | 0.81[CEU][hapmap] |
rs6661932 | 0.95[EUR][1000 genomes] |
rs6663448 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6664380 | 0.84[CEU][hapmap] |
rs6665728 | 0.90[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rs6673356 | 0.84[CEU][hapmap] |
rs6675009 | 0.80[CEU][hapmap] |
rs6686526 | 0.84[CEU][hapmap] |
rs6692062 | 0.81[CEU][hapmap] |
rs6693927 | 0.84[CEU][hapmap] |
rs7541328 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7543689 | 0.81[CEU][hapmap] |
rs7548977 | 0.80[CEU][hapmap] |
rs7551014 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2757755 | chr1:152472839-152898153 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | esv2758970 | chr1:152472839-152898153 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
3 | nsv427786 | chr1:152572990-152898153 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
4 | nsv1013433 | chr1:152619305-153262215 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
5 | nsv535170 | chr1:152619305-153262215 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
6 | nsv1001834 | chr1:152648853-153279143 | Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 44 gene(s) | inside rSNPs | diseases |
7 | nsv547899 | chr1:152672005-153245082 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
8 | nsv831592 | chr1:152815054-152997162 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
9 | nsv998873 | chr1:152869127-152975258 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:152886400-152895000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |